RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FBXL7Q9UJT9 491 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 F11RQ9Y624 299 aaKnown RBP7.81□□□□□ -1.16
VPS28-204ENST00000526054 SACSQ9NZJ4 4579 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 IGLV11-55A0A075B6I3 123 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 LINC01619G3V211 115 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 LY86O95711 162 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 HSPB1P04792 205 aaKnown RBP7.8□□□□□ -1.16
VPS28-204ENST00000526054 BCAP31P51572 246 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 KLK9Q2XQG4 91 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 C15orf32Q32M92 178 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 AARDQ4LEZ3 155 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 SPINK9Q5DT21 86 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 Q6ZRM9 215 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 C19orf35Q6ZS72 473 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 OR2C3Q8N628 320 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 ZNF431Q8TF32 576 aaPredicted RBP7.8□□□□□ -1.16
VPS28-204ENST00000526054 FANCD2OSQ96PS1 177 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 ASCL2Q99929 193 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 SEC22CQ9BRL7 303 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 KLK9Q9UKQ9 250 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 TMED3Q9Y3Q3 217 aa7.8□□□□□ -1.16
VPS28-204ENST00000526054 A0A1B0GU03 582 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 CEBPZOSA8MTT3 80 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 INS-IGF2F8WCM5 200 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 SSNA1O43805 119 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 IFNA21P01568 189 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 HOXB5P09067 269 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 SLC25A6P12236 298 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 ZP3P21754 424 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 SNCAP37840 140 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 INSL3P51460 131 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 SLC25A24Q6NUK1 477 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 ZNF343Q6P1L6 599 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 ZNF114Q8NC26 417 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 OR1P1Q8NH06 330 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 OR1S1Q8NH92 325 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 EEF1AKMT3Q96AZ1 226 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 CXorf58Q96LI9 332 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 MED28Q9H204 178 aa7.79□□□□□ -1.16
VPS28-204ENST00000526054 RANGRFQ9HD47 186 aaPredicted RBP7.79□□□□□ -1.16
VPS28-204ENST00000526054 PEF1Q9UBV8 284 aaKnown RBP7.79□□□□□ -1.16
VPS28-204ENST00000526054 IGHV4OR15-8A0A075B7B6 117 aa7.78□□□□□ -1.16
VPS28-204ENST00000526054 A0A087WW49 117 aa7.78□□□□□ -1.16
VPS28-204ENST00000526054 ANKRD34BA5PLL1 514 aa7.78□□□□□ -1.16
VPS28-204ENST00000526054 NDUFB8O95169 186 aa7.78□□□□□ -1.16
VPS28-204ENST00000526054 SUB1P53999 127 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS28-204ENST00000526054 RRAS2P62070 204 aaPredicted RBP7.78□□□□□ -1.16
VPS28-204ENST00000526054 GGNBP1Q5YKI7 109 aa7.78□□□□□ -1.16
VPS28-204ENST00000526054 OR52B4Q8NGK2 314 aa7.78□□□□□ -1.16
VPS28-204ENST00000526054 CHAC2Q8WUX2 184 aa7.78□□□□□ -1.16
VPS28-204ENST00000526054 MITD1Q8WV92 249 aa7.78□□□□□ -1.16
VPS28-204ENST00000526054 SMAD5-AS1Q9Y6J3 95 aa7.78□□□□□ -1.16
VPS28-204ENST00000526054 RYR2Q92736 4967 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.77□□□□□ -1.17
VPS28-204ENST00000526054 TRBV7-1A0A0A6YYK4 115 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 FAM90A26D6RGX4 464 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 C3orf84H3BNL1 204 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 CORTO00230 105 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 PFDN1O60925 122 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 SAP30O75446 220 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 NXPH3O95157 252 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 SLURP1P55000 103 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 TNFRSF9Q07011 255 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 RPEL1Q2QD12 228 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 C12orf45Q8N5I9 185 aaPredicted RBP7.77□□□□□ -1.17
VPS28-204ENST00000526054 VN1R17PQ8TDU5 208 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 MISP3Q96FF7 219 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 HIPK2Q9H2X6 1198 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 HEYLQ9NQ87 328 aaPredicted RBP7.77□□□□□ -1.17
VPS28-204ENST00000526054 HSPB7Q9UBY9 170 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 DMRT1Q9Y5R6 373 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 STAB2Q8WWQ8 2551 aa7.77□□□□□ -1.17
VPS28-204ENST00000526054 MFSD2BA6NFX1 497 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 OVOL1O14753 267 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 PITX3O75364 302 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 MED6O75586 246 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 ADAP1O75689 374 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 IGHV3-23P01764 117 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 RNASE2P10153 161 aaKnown RBP7.76□□□□□ -1.17
VPS28-204ENST00000526054 HTR2BP41595 481 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 MFAP2P55001 183 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 CLEC19AQ6UXS0 136 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 AKAP14Q86UN6 197 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 NOXA1Q86UR1 476 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 UXS1Q8NBZ7 420 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 SLC24A4Q8NFF2 622 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 DTD1Q8TEA8 209 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 DCUN1D4Q92564 292 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 RBKSQ9H477 322 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 MGAT4CQ9UBM8 478 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 S4R3C0 116 aa7.76□□□□□ -1.17
VPS28-204ENST00000526054 SORL1Q92673 2214 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 GOSR2O14653 212 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 GGCTO75223 188 aaKnown RBP7.75□□□□□ -1.17
VPS28-204ENST00000526054 TRBV12-3P01733 135 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 NPY1RP25929 384 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 ARL3P36405 182 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 FCN2Q15485 313 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 MUC7Q8TAX7 377 aa7.75□□□□□ -1.17
VPS28-204ENST00000526054 ZNF502Q8TBZ5 544 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms