RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 LTC4SQ16873 150 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 DEFB133Q30KQ1 61 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 C12orf74Q32Q52 190 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 IBA57Q5T440 356 aaKnown RBP3.4□□□□□ -1.87
CD44-220ENST00000525688 SBSNQ6UWP8 590 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 ZNF493Q6ZR52 646 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 Q6ZR54 194 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 TMEM252Q8N6L7 170 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 ZNF283Q8N7M2 679 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 LY6G5BQ8NDX9 201 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 OR1L1Q8NH94 360 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 LMX1AQ8TE12 382 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 STARD4Q96DR4 205 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 TSPAN32Q96QS1 320 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 ZNF382Q96SR6 550 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 ZNF184Q99676 751 aaPredicted RBP3.4□□□□□ -1.87
CD44-220ENST00000525688 MRPL20Q9BYC9 149 aaKnown RBP3.4□□□□□ -1.87
CD44-220ENST00000525688 EIF5A2Q9GZV4 153 aaKnown RBP3.4□□□□□ -1.87
CD44-220ENST00000525688 SLCO1B3Q9NPD5 702 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 CCL28Q9NRJ3 127 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 SNX12Q9UMY4 172 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 KLF13Q9Y2Y9 288 aaPredicted RBP3.4□□□□□ -1.87
CD44-220ENST00000525688 NEUROG3Q9Y4Z2 214 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 PCYT1BQ9Y5K3 369 aaPredicted RBP3.4□□□□□ -1.87
CD44-220ENST00000525688 FLVCR1Q9Y5Y0 555 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 U3KQ87 197 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 SETXQ7Z333 2677 aaKnown RBP3.4□□□□□ -1.87
CD44-220ENST00000525688 LRP4O75096 1905 aa3.4□□□□□ -1.87
CD44-220ENST00000525688 MAP1BP46821 2468 aaKnown RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 ASXL3Q9C0F0 2248 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 TDRD6O60522 2096 aaKnown RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 BOD1L1Q8NFC6 3051 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 MEIKINA0A087WXM9 373 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 NKX2-6A6NCS4 301 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 AIPO00170 330 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 ISLRO14498 428 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 GYG2O15488 501 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 TCF21O43680 179 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 SLC25A14O95258 325 aaPredicted RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 HLA-DRB1P01911 266 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 OR12D1P0DN82 309 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 CTSEP14091 401 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 RPL7P18124 248 aaKnown RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 RPS3P23396 243 aaKnown RBP eCLIP3.39□□□□□ -1.87
CD44-220ENST00000525688 SRIP30626 198 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 RPL22P35268 128 aaKnown RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 LHX2P50458 406 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 ZNF140P52738 457 aaPredicted RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 UBE2NP61088 152 aaKnown RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 MEF2CQ06413 473 aaPredicted RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 MORN2Q502X0 79 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 TNFAIP8L3Q5GJ75 292 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 GLYATQ6IB77 296 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 GUSBP11Q6P575 273 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 HAGHLQ6PII5 290 aaPredicted RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 PLET1Q6UQ28 207 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 ATP5L2Q7Z4Y8 100 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 GKN2Q86XP6 184 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 ANKRD29Q8N6D5 301 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 SLC30A7Q8NEW0 376 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 OR5A1Q8NGJ0 315 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 OR51H1Q8NH63 302 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 CCL4L1Q8NHW4 92 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 DCAKDQ8WVC6 231 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 ACOT12Q8WYK0 555 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 RPUSD4Q96CM3 377 aaKnown RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 MALSU1Q96EH3 234 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 TBL1YQ9BQ87 522 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 TMEM243Q9BU79 118 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 SAMD10Q9BYL1 202 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 C20orf27Q9GZN8 174 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 PBOV1Q9GZY1 135 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 PARP11Q9NR21 331 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 GNG8Q9UK08 70 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 POMPQ9Y244 141 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 F11RQ9Y624 299 aaKnown RBP3.39□□□□□ -1.87
CD44-220ENST00000525688 PXMP4Q9Y6I8 212 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 ENPP4Q9Y6X5 453 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 SCN8AQ9UQD0 1980 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 DYSFO75923 2080 aa3.39□□□□□ -1.87
CD44-220ENST00000525688 APC2O95996 2303 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 RP1P56715 2156 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 FAM168BA1KXE4 195 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 F5H5P2 479 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 TMEM250H0YL14 139 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 SLC22A1O15245 554 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 ANGPTL7O43827 346 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 PIAS1O75925 651 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 CDS2O95674 445 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 ZNF682O95780 498 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 FAM107AO95990 144 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 C8GP07360 202 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 CNTFRP26992 372 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 G6PCP35575 357 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 POLR2HP52434 150 aaKnown RBP3.38□□□□□ -1.87
CD44-220ENST00000525688 MP68P56378 58 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 DEFA1P59665 94 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 GNG11P61952 73 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 RBMY1FQ15415 496 aaKnown RBP3.38□□□□□ -1.87
CD44-220ENST00000525688 COA6Q5JTJ3 125 aaKnown RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms