RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 SELENOHQ8IZQ5 122 aaKnown RBP15.76■□□□□ 0.11
VPS28-203ENST00000524521 LHFPL5Q8TAF8 219 aa15.76■□□□□ 0.11
VPS28-203ENST00000524521 MARC2Q969Z3 335 aa15.76■□□□□ 0.11
VPS28-203ENST00000524521 PINX1Q96BK5 328 aaKnown RBP15.76■□□□□ 0.11
VPS28-203ENST00000524521 NEURL2Q9BR09 285 aa15.76■□□□□ 0.11
VPS28-203ENST00000524521 ZMAT4Q9H898 229 aa15.76■□□□□ 0.11
VPS28-203ENST00000524521 MRPL27Q9P0M9 148 aaKnown RBP15.76■□□□□ 0.11
VPS28-203ENST00000524521 MT-CO2P00403 227 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 IGHV3-48P01763 117 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 CD7P09564 240 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 ADMP35318 185 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 MFAP4P55083 255 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 BTNL8Q6UX41 500 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 Q6ZRM9 215 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 FAM219AQ8IW50 185 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 TMEM61Q8N0U2 210 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 TMEM190Q8WZ59 177 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 RBPMSQ93062 196 aaKnown RBP15.75■□□□□ 0.11
VPS28-203ENST00000524521 ENY2Q9NPA8 101 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 GAR1Q9NY12 217 aaKnown RBP15.75■□□□□ 0.11
VPS28-203ENST00000524521 KCNIP3Q9Y2W7 256 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 V9GYH0 126 aa15.75■□□□□ 0.11
VPS28-203ENST00000524521 ZNF701M0R085 212 aaPredicted RBP15.74■□□□□ 0.11
VPS28-203ENST00000524521 NDUFA4O00483 81 aa15.74■□□□□ 0.11
VPS28-203ENST00000524521 CTSGP08311 255 aa15.74■□□□□ 0.11
VPS28-203ENST00000524521 C8orf88P0DMB2 117 aa15.74■□□□□ 0.11
VPS28-203ENST00000524521 HOXA1P49639 335 aaPredicted RBP15.74■□□□□ 0.11
VPS28-203ENST00000524521 TMEM268Q5VZI3 342 aa15.74■□□□□ 0.11
VPS28-203ENST00000524521 TOMM5Q8N4H5 51 aa15.74■□□□□ 0.11
VPS28-203ENST00000524521 RCHY1Q96PM5 261 aa15.74■□□□□ 0.11
VPS28-203ENST00000524521 C20orf24Q9BUV8 137 aa15.74■□□□□ 0.11
VPS28-203ENST00000524521 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.74■□□□□ 0.11
VPS28-203ENST00000524521 IGHV3OR16-8A0A075B7F1 116 aa15.73■□□□□ 0.11
VPS28-203ENST00000524521 INS-IGF2F8WCM5 200 aa15.73■□□□□ 0.11
VPS28-203ENST00000524521 NUPL2O15504 423 aaKnown RBP15.73■□□□□ 0.11
VPS28-203ENST00000524521 SCAF4O95104 1147 aaKnown RBP15.73■□□□□ 0.11
VPS28-203ENST00000524521 AKR1C4P17516 323 aa15.73■□□□□ 0.11
VPS28-203ENST00000524521 FAUP35544 74 aaKnown RBP15.73■□□□□ 0.11
VPS28-203ENST00000524521 SUB1P53999 127 aaKnown RBP eCLIP15.73■□□□□ 0.11
VPS28-203ENST00000524521 AP3S2P59780 193 aa15.73■□□□□ 0.11
VPS28-203ENST00000524521 TMEM230Q96A57 120 aa15.73■□□□□ 0.11
VPS28-203ENST00000524521 GPR146Q96CH1 333 aa15.73■□□□□ 0.11
VPS28-203ENST00000524521 TXN2Q99757 166 aa15.73■□□□□ 0.11
VPS28-203ENST00000524521 KLF9Q13886 244 aaPredicted RBP15.72■□□□□ 0.11
VPS28-203ENST00000524521 ZNF79Q15937 498 aa15.72■□□□□ 0.11
VPS28-203ENST00000524521 RBPMS2Q6ZRY4 209 aaKnown RBP15.72■□□□□ 0.11
VPS28-203ENST00000524521 CCDC190Q86UF4 302 aa15.72■□□□□ 0.11
VPS28-203ENST00000524521 DEFB125Q8N687 156 aa15.72■□□□□ 0.11
VPS28-203ENST00000524521 TRIM63Q969Q1 353 aa15.72■□□□□ 0.11
VPS28-203ENST00000524521 DAZ1Q9NQZ3 744 aaKnown RBP15.72■□□□□ 0.11
VPS28-203ENST00000524521 TMEM56-RWDD3S4R434 201 aa15.72■□□□□ 0.11
VPS28-203ENST00000524521 OR11H12B2RN74 326 aa15.71■□□□□ 0.11
VPS28-203ENST00000524521 ZNF207O43670 478 aaKnown RBP15.71■□□□□ 0.11
VPS28-203ENST00000524521 GNG7O60262 68 aa15.71■□□□□ 0.11
VPS28-203ENST00000524521 FCGR2BP31994 310 aaPredicted RBP15.71■□□□□ 0.11
VPS28-203ENST00000524521 SPCS3P61009 180 aa15.71■□□□□ 0.11
VPS28-203ENST00000524521 RELQ04864 619 aaPredicted RBP15.71■□□□□ 0.11
VPS28-203ENST00000524521 TMEM187Q14656 261 aa15.71■□□□□ 0.11
VPS28-203ENST00000524521 HAGHQ16775 308 aa15.71■□□□□ 0.11
VPS28-203ENST00000524521 GALNT14Q96FL9 552 aa15.71■□□□□ 0.11
VPS28-203ENST00000524521 TM2D3Q9BRN9 247 aa15.71■□□□□ 0.11
VPS28-203ENST00000524521 PRR13Q9NZ81 148 aa15.71■□□□□ 0.11
VPS28-203ENST00000524521 CACNG5Q9UF02 275 aa15.71■□□□□ 0.11
VPS28-203ENST00000524521 TRAV25A0A0B4J276 109 aa15.7■□□□□ 0.1
VPS28-203ENST00000524521 YIF1AO95070 293 aa15.7■□□□□ 0.1
VPS28-203ENST00000524521 RNASE2P10153 161 aaKnown RBP15.7■□□□□ 0.1
VPS28-203ENST00000524521 SLC16A13Q7RTY0 426 aa15.7■□□□□ 0.1
VPS28-203ENST00000524521 DUSP18Q8NEJ0 188 aa15.7■□□□□ 0.1
VPS28-203ENST00000524521 OR52B4Q8NGK2 314 aa15.7■□□□□ 0.1
VPS28-203ENST00000524521 OR52E5Q8NH55 327 aa15.7■□□□□ 0.1
VPS28-203ENST00000524521 WFDC10AQ9H1F0 79 aa15.7■□□□□ 0.1
VPS28-203ENST00000524521 K7EMT4 169 aa15.69■□□□□ 0.1
VPS28-203ENST00000524521 NPBWR1P48145 328 aa15.69■□□□□ 0.1
VPS28-203ENST00000524521 ANKRD55Q3KP44 614 aa15.69■□□□□ 0.1
VPS28-203ENST00000524521 AARDQ4LEZ3 155 aa15.69■□□□□ 0.1
VPS28-203ENST00000524521 SPANXN2Q5MJ10 180 aa15.69■□□□□ 0.1
VPS28-203ENST00000524521 IL22RA2Q969J5 263 aa15.69■□□□□ 0.1
VPS28-203ENST00000524521 HEYLQ9NQ87 328 aaPredicted RBP15.69■□□□□ 0.1
VPS28-203ENST00000524521 CORTO00230 105 aa15.68■□□□□ 0.1
VPS28-203ENST00000524521 SUPT4H1P63272 117 aaKnown RBP15.68■□□□□ 0.1
VPS28-203ENST00000524521 PVRIGQ6DKI7 326 aa15.68■□□□□ 0.1
VPS28-203ENST00000524521 SRD5A3Q9H8P0 318 aa15.68■□□□□ 0.1
VPS28-203ENST00000524521 C15orf62A8K5M9 175 aa15.67■□□□□ 0.1
VPS28-203ENST00000524521 CEBPZOSA8MTT3 80 aa15.67■□□□□ 0.1
VPS28-203ENST00000524521 ANXA3P12429 323 aa15.67■□□□□ 0.1
VPS28-203ENST00000524521 LAMTOR1Q6IAA8 161 aa15.67■□□□□ 0.1
VPS28-203ENST00000524521 TMED4Q7Z7H5 227 aa15.67■□□□□ 0.1
VPS28-203ENST00000524521 ZNF414Q96IQ9 312 aa15.67■□□□□ 0.1
VPS28-203ENST00000524521 NXPH3O95157 252 aa15.66■□□□□ 0.1
VPS28-203ENST00000524521 SULT1A3P0DMM9 295 aa15.66■□□□□ 0.1
VPS28-203ENST00000524521 SULT1A4P0DMN0 295 aa15.66■□□□□ 0.1
VPS28-203ENST00000524521 MLANAQ16655 118 aa15.66■□□□□ 0.1
VPS28-203ENST00000524521 LINC00322Q6ZN03 302 aaPredicted RBP15.66■□□□□ 0.1
VPS28-203ENST00000524521 LYZL2Q7Z4W2 148 aa15.66■□□□□ 0.1
VPS28-203ENST00000524521 LGI3Q8N145 548 aa15.66■□□□□ 0.1
VPS28-203ENST00000524521 SPATA25Q9BR10 227 aa15.66■□□□□ 0.1
VPS28-203ENST00000524521 SMPXQ9UHP9 88 aa15.66■□□□□ 0.1
VPS28-203ENST00000524521 A0A0B4J2A0 478 aa15.65■□□□□ 0.1
VPS28-203ENST00000524521 RBMY1BA6NDE4 496 aaKnown RBP15.65■□□□□ 0.1
VPS28-203ENST00000524521 RBMY1EA6NEQ0 496 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms