RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 MRPS10P82664 201 aaKnown RBP13.01□□□□□ -0.33
DDX41-217ENST00000515562 SSBP1Q04837 148 aaKnown RBP13.01□□□□□ -0.33
DDX41-217ENST00000515562 TRIM16LQ309B1 348 aa13.01□□□□□ -0.33
DDX41-217ENST00000515562 ODF3L2Q3SX64 289 aa13.01□□□□□ -0.33
DDX41-217ENST00000515562 GPR141Q7Z602 305 aa13.01□□□□□ -0.33
DDX41-217ENST00000515562 TERB2Q8NHR7 220 aa13.01□□□□□ -0.33
DDX41-217ENST00000515562 PINX1Q96BK5 328 aaKnown RBP13.01□□□□□ -0.33
DDX41-217ENST00000515562 OVOL2Q9BRP0 275 aa13.01□□□□□ -0.33
DDX41-217ENST00000515562 NXF2Q9GZY0 626 aaKnown RBP13.01□□□□□ -0.33
DDX41-217ENST00000515562 UBQLN2Q9UHD9 624 aa13.01□□□□□ -0.33
DDX41-217ENST00000515562 SMPXQ9UHP9 88 aa13.01□□□□□ -0.33
DDX41-217ENST00000515562 IGHV7-4-1A0A0J9YVY3 117 aa13□□□□□ -0.33
DDX41-217ENST00000515562 CORTO00230 105 aa13□□□□□ -0.33
DDX41-217ENST00000515562 RGS5O15539 181 aa13□□□□□ -0.33
DDX41-217ENST00000515562 JTBO76095 146 aa13□□□□□ -0.33
DDX41-217ENST00000515562 RAB3DO95716 219 aa13□□□□□ -0.33
DDX41-217ENST00000515562 P0C879 139 aa13□□□□□ -0.33
DDX41-217ENST00000515562 IZUMO4Q1ZYL8 232 aa13□□□□□ -0.33
DDX41-217ENST00000515562 SCGB2B2Q4G0G5 96 aa13□□□□□ -0.33
DDX41-217ENST00000515562 Q6ZWC4 215 aa13□□□□□ -0.33
DDX41-217ENST00000515562 TMEM116Q8NCL8 245 aa13□□□□□ -0.33
DDX41-217ENST00000515562 OR4D10Q8NGI6 311 aa13□□□□□ -0.33
DDX41-217ENST00000515562 OR13C8Q8NGS7 320 aa13□□□□□ -0.33
DDX41-217ENST00000515562 TP53TG1Q9Y2A0 90 aa13□□□□□ -0.33
DDX41-217ENST00000515562 KIR2DL5BA0A0G2JN68 375 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 KIR2DL5BA0A0G2JPC4 375 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 UBE2CO00762 179 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 ST8SIA3O43173 380 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 IFNA17P01571 189 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 CTSDP07339 412 aaPredicted RBP12.99□□□□□ -0.33
DDX41-217ENST00000515562 UCP1P25874 307 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 BMI1P35226 326 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 NPBWR1P48145 328 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 MEF2DQ14814 521 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 SPINK9Q5DT21 86 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 STEAP1BQ6NZ63 245 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 KIR2DL5AQ8N109 375 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 KIR2DL5BQ8NHK3 375 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 RNASE11Q8TAA1 199 aaKnown RBP12.99□□□□□ -0.33
DDX41-217ENST00000515562 RRNAD1Q96FB5 475 aaKnown RBP12.99□□□□□ -0.33
DDX41-217ENST00000515562 ZNF414Q96IQ9 312 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 RNF2Q99496 336 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 GINS3Q9BRX5 216 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 RHPN1-AS1Q9BWJ2 59 aa12.99□□□□□ -0.33
DDX41-217ENST00000515562 TRAV14DV4A0A0A6YYC5 116 aa12.98□□□□□ -0.33
DDX41-217ENST00000515562 A0A0B4J293 547 aa12.98□□□□□ -0.33
DDX41-217ENST00000515562 CHEK1O14757 476 aa12.98□□□□□ -0.33
DDX41-217ENST00000515562 IGHV3-48P01763 117 aa12.98□□□□□ -0.33
DDX41-217ENST00000515562 ALDH3B2P48448 385 aa12.98□□□□□ -0.33
DDX41-217ENST00000515562 HOXA1P49639 335 aaPredicted RBP12.98□□□□□ -0.33
DDX41-217ENST00000515562 SUB1P53999 127 aaKnown RBP eCLIP12.98□□□□□ -0.33
DDX41-217ENST00000515562 WFDC3Q8IUB2 231 aa12.98□□□□□ -0.33
DDX41-217ENST00000515562 DUSP18Q8NEJ0 188 aa12.98□□□□□ -0.33
DDX41-217ENST00000515562 C6orf62Q9GZU0 229 aaPredicted RBP12.98□□□□□ -0.33
DDX41-217ENST00000515562 MIXL1Q9H2W2 232 aa12.98□□□□□ -0.33
DDX41-217ENST00000515562 CD5P06127 495 aa12.97□□□□□ -0.33
DDX41-217ENST00000515562 CMC4P56277 68 aaPredicted RBP12.97□□□□□ -0.33
DDX41-217ENST00000515562 SURF2Q15527 256 aaPredicted RBP12.97□□□□□ -0.33
DDX41-217ENST00000515562 FAM219AQ8IW50 185 aa12.97□□□□□ -0.33
DDX41-217ENST00000515562 STPG3Q8N7X2 389 aa12.97□□□□□ -0.33
DDX41-217ENST00000515562 MARCH1Q8TCQ1 289 aa12.97□□□□□ -0.33
DDX41-217ENST00000515562 SMIM4Q8WVI0 70 aa12.97□□□□□ -0.33
DDX41-217ENST00000515562 GALNT14Q96FL9 552 aa12.97□□□□□ -0.33
DDX41-217ENST00000515562 ENY2Q9NPA8 101 aa12.97□□□□□ -0.33
DDX41-217ENST00000515562 RABL2AQ9UBK7 228 aaPredicted RBP12.97□□□□□ -0.33
DDX41-217ENST00000515562 RABL2BQ9UNT1 228 aa12.97□□□□□ -0.33
DDX41-217ENST00000515562 C14orf166Q9Y224 244 aaKnown RBP12.97□□□□□ -0.33
DDX41-217ENST00000515562 SPRY2O43597 315 aa12.96□□□□□ -0.33
DDX41-217ENST00000515562 SCGB2A1O75556 95 aa12.96□□□□□ -0.33
DDX41-217ENST00000515562 SPCS2Q15005 226 aa12.96□□□□□ -0.33
DDX41-217ENST00000515562 DEFB135Q30KP9 77 aa12.96□□□□□ -0.33
DDX41-217ENST00000515562 SP6Q3SY56 376 aa12.96□□□□□ -0.33
DDX41-217ENST00000515562 PVRIGQ6DKI7 326 aa12.96□□□□□ -0.33
DDX41-217ENST00000515562 ZNF600Q6ZNG1 722 aa12.96□□□□□ -0.33
DDX41-217ENST00000515562 RAB2BQ8WUD1 216 aa12.96□□□□□ -0.33
DDX41-217ENST00000515562 DNAH1Q9P2D7 4330 aa12.95□□□□□ -0.34
DDX41-217ENST00000515562 IGHV3-49A0A0A0MS15 119 aa12.95□□□□□ -0.34
DDX41-217ENST00000515562 DISC1C4P0D8 188 aa12.95□□□□□ -0.34
DDX41-217ENST00000515562 RNASE2P10153 161 aaKnown RBP12.95□□□□□ -0.34
DDX41-217ENST00000515562 PAFAH1B2P68402 229 aa12.95□□□□□ -0.34
DDX41-217ENST00000515562 TOMM20LQ6UXN7 152 aa12.95□□□□□ -0.34
DDX41-217ENST00000515562 TMEM222Q9H0R3 208 aa12.95□□□□□ -0.34
DDX41-217ENST00000515562 CCDC59Q9P031 241 aaKnown RBP12.95□□□□□ -0.34
DDX41-217ENST00000515562 TEX13DA0A0J9YY54 714 aaPredicted RBP12.94□□□□□ -0.34
DDX41-217ENST00000515562 CTDSP2O14595 271 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 CTDSPLO15194 276 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 CDS2O95674 445 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 OR5AC1P0C628 307 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 OPRK1P41145 380 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 ETV6P41212 452 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 TNFRSF9Q07011 255 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 AARDQ4LEZ3 155 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 FAAP20Q6NZ36 180 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 BCL7BQ9BQE9 202 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 NAA60Q9H7X0 242 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 ZFAND3Q9H8U3 227 aa12.94□□□□□ -0.34
DDX41-217ENST00000515562 PUS1Q9Y606 427 aaKnown RBP eCLIP12.94□□□□□ -0.34
DDX41-217ENST00000515562 A0A0G2JRQ6 117 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 A0A0J9YWU9 116 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 AKAIN1P0CW23 69 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms