RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ZNF57Q68EA5 555 aaPredicted RBP8.65□□□□□ -1.02
VCAN-212ENST00000515397 GTSCR1Q86UQ5 136 aa8.65□□□□□ -1.02
VCAN-212ENST00000515397 TMEM61Q8N0U2 210 aa8.65□□□□□ -1.02
VCAN-212ENST00000515397 SLC35G3Q8N808 338 aa8.65□□□□□ -1.02
VCAN-212ENST00000515397 ZNF414Q96IQ9 312 aa8.65□□□□□ -1.02
VCAN-212ENST00000515397 PRRT1Q99946 306 aa8.65□□□□□ -1.02
VCAN-212ENST00000515397 NEURL2Q9BR09 285 aa8.65□□□□□ -1.02
VCAN-212ENST00000515397 YIF1AO95070 293 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 S100A5P33763 92 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 HOXA1P49639 335 aaPredicted RBP8.64□□□□□ -1.03
VCAN-212ENST00000515397 MFAP4P55083 255 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 KLF9Q13886 244 aaPredicted RBP8.64□□□□□ -1.03
VCAN-212ENST00000515397 HAGHQ16775 308 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 CCDC190Q86UF4 302 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 TRIM63Q969Q1 353 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 BSCL2Q96G97 398 aaPredicted RBP8.64□□□□□ -1.03
VCAN-212ENST00000515397 WWC2-AS2Q96NR7 200 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 RCHY1Q96PM5 261 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 ZNF436Q9C0F3 470 aaPredicted RBP8.64□□□□□ -1.03
VCAN-212ENST00000515397 RABL2AQ9UBK7 228 aaPredicted RBP8.64□□□□□ -1.03
VCAN-212ENST00000515397 CACNG5Q9UF02 275 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 SCP2D1Q9UJQ7 156 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 RABL2BQ9UNT1 228 aa8.64□□□□□ -1.03
VCAN-212ENST00000515397 IGHV3OR16-13A0A075B7E8 117 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 IGHV3-74A0A0B4J1X5 117 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 LINC00854A0A1B0GVQ3 168 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 A8MWP6 167 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 ATG12O94817 140 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 RNASE2P10153 161 aaKnown RBP8.63□□□□□ -1.03
VCAN-212ENST00000515397 SNCAP37840 140 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 SUPT4H1P63272 117 aaKnown RBP8.63□□□□□ -1.03
VCAN-212ENST00000515397 TMEM187Q14656 261 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 SURF2Q15527 256 aaPredicted RBP8.63□□□□□ -1.03
VCAN-212ENST00000515397 LYZL2Q7Z4W2 148 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 TMED4Q7Z7H5 227 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 TOMM5Q8N4H5 51 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 OR1L6Q8NGR2 347 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 OR2K2Q8NGT1 345 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 TMEM190Q8WZ59 177 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 RBPMSQ93062 196 aaKnown RBP8.63□□□□□ -1.03
VCAN-212ENST00000515397 PDCD10Q9BUL8 212 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 RETNQ9HD89 108 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 PALMDQ9NP74 551 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 SLC2A8Q9NY64 477 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 TECRQ9NZ01 308 aaKnown RBP8.63□□□□□ -1.03
VCAN-212ENST00000515397 MRPL36Q9P0J6 103 aaKnown RBP8.63□□□□□ -1.03
VCAN-212ENST00000515397 UFC1Q9Y3C8 167 aa8.63□□□□□ -1.03
VCAN-212ENST00000515397 IGKV3-7A0A075B6H7 116 aa8.62□□□□□ -1.03
VCAN-212ENST00000515397 RBMY1BA6NDE4 496 aaKnown RBP8.62□□□□□ -1.03
VCAN-212ENST00000515397 RBMY1EA6NEQ0 496 aaKnown RBP8.62□□□□□ -1.03
VCAN-212ENST00000515397 OR11H12B2RN74 326 aa8.62□□□□□ -1.03
VCAN-212ENST00000515397 NUPL2O15504 423 aaKnown RBP8.62□□□□□ -1.03
VCAN-212ENST00000515397 RBMY1DP0C7P1 496 aaKnown RBP8.62□□□□□ -1.03
VCAN-212ENST00000515397 C8orf88P0DMB2 117 aa8.62□□□□□ -1.03
VCAN-212ENST00000515397 DHODHQ02127 395 aa8.62□□□□□ -1.03
VCAN-212ENST00000515397 SPSB3Q6PJ21 355 aa8.62□□□□□ -1.03
VCAN-212ENST00000515397 FNDC4Q9H6D8 234 aaPredicted RBP8.62□□□□□ -1.03
VCAN-212ENST00000515397 ZMAT4Q9H898 229 aa8.62□□□□□ -1.03
VCAN-212ENST00000515397 ENY2Q9NPA8 101 aa8.62□□□□□ -1.03
VCAN-212ENST00000515397 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.62□□□□□ -1.03
VCAN-212ENST00000515397 MRPL27Q9P0M9 148 aaKnown RBP8.62□□□□□ -1.03
VCAN-212ENST00000515397 KCNIP3Q9Y2W7 256 aa8.62□□□□□ -1.03
VCAN-212ENST00000515397 IGHV3-66A0A0C4DH42 116 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 NDUFA4O00483 81 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 GNG7O60262 68 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 SPCS3P61009 180 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 BAK1Q16611 211 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 RBPMS2Q6ZRY4 209 aaKnown RBP8.61□□□□□ -1.03
VCAN-212ENST00000515397 ZNF114Q8NC26 417 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 OR52B4Q8NGK2 314 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 SRD5A3Q9H8P0 318 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 UBQLN2Q9UHD9 624 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 TMEM56-RWDD3S4R434 201 aa8.61□□□□□ -1.03
VCAN-212ENST00000515397 CEBPZOSA8MTT3 80 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 A8MZ25 164 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 B3GALNT1O75752 331 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 APOHP02749 345 aaPredicted RBP8.6□□□□□ -1.03
VCAN-212ENST00000515397 TFPI2P48307 235 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 CCR6P51684 374 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 TOMM20LQ6UXN7 152 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 LILRB2Q8N423 598 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 SCGB3A2Q96PL1 93 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 RNF2Q99496 336 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 FAM110AQ9BQ89 295 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 TM2D3Q9BRN9 247 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 SRRQ9GZT4 340 aa8.6□□□□□ -1.03
VCAN-212ENST00000515397 HEYLQ9NQ87 328 aaPredicted RBP8.6□□□□□ -1.03
VCAN-212ENST00000515397 DAZ1Q9NQZ3 744 aaKnown RBP8.6□□□□□ -1.03
VCAN-212ENST00000515397 TMEM50AO95807 157 aa8.59□□□□□ -1.03
VCAN-212ENST00000515397 VAMP1P23763 118 aa8.59□□□□□ -1.03
VCAN-212ENST00000515397 FAUP35544 74 aaKnown RBP8.59□□□□□ -1.03
VCAN-212ENST00000515397 OPRK1P41145 380 aa8.59□□□□□ -1.03
VCAN-212ENST00000515397 SUB1P53999 127 aaKnown RBP eCLIP8.59□□□□□ -1.03
VCAN-212ENST00000515397 ELLP55199 621 aaPredicted RBP8.59□□□□□ -1.03
VCAN-212ENST00000515397 AP3S2P59780 193 aa8.59□□□□□ -1.03
VCAN-212ENST00000515397 ANKRD55Q3KP44 614 aa8.59□□□□□ -1.03
VCAN-212ENST00000515397 SPANXN2Q5MJ10 180 aa8.59□□□□□ -1.03
VCAN-212ENST00000515397 LINC00322Q6ZN03 302 aaPredicted RBP8.59□□□□□ -1.03
VCAN-212ENST00000515397 SLC16A13Q7RTY0 426 aa8.59□□□□□ -1.03
VCAN-212ENST00000515397 FAM219AQ8IW50 185 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms