RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 GPR183P32249 361 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 MFAP2P55001 183 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 TNFRSF9Q07011 255 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 TATDN3Q17R31 274 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 FAM209BQ5JX69 171 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 WFDC9Q8NEX5 89 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 ZNF431Q8TF32 576 aaPredicted RBP8.8□□□□□ -1
LIMCH1-210ENST00000509454 GPR61Q9BZJ8 451 aa8.8□□□□□ -1
LIMCH1-210ENST00000509454 PAIP2BQ9ULR5 123 aaKnown RBP8.8□□□□□ -1
LIMCH1-210ENST00000509454 VWFP04275 2813 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 OR2T8A6NH00 312 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 BMPR1BO00238 502 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 SCGB1D2O95969 90 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 IFNA10P01566 189 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 IGHV3-48P01763 117 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 CLEC3BP05452 202 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 HTR2BP41595 481 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 SYNJ2BPP57105 145 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 ZNF114Q8NC26 417 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 VN1R17PQ8TDU5 208 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 DTD1Q8TEA8 209 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 MITD1Q8WV92 249 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 CCDC140Q96MF4 163 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 ELOVL1Q9BW60 279 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 MAGT1Q9H0U3 335 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 GPN1Q9HCN4 374 aaPredicted RBP8.79□□□□□ -1
LIMCH1-210ENST00000509454 C21orf62Q9NYP8 219 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 GSKIPQ9P0R6 139 aa8.79□□□□□ -1
LIMCH1-210ENST00000509454 TRRAPQ9Y4A5 3859 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 C5orf51A6NDU8 294 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 INMT-MINDY4F8WBC2 141 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 WRBO00258 174 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 CCSO14618 274 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 GGCTO75223 188 aaKnown RBP8.78□□□□□ -1
LIMCH1-210ENST00000509454 SAP30O75446 220 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 MED6O75586 246 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 MT-CO2P00403 227 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 RNASE2P10153 161 aaKnown RBP8.78□□□□□ -1
LIMCH1-210ENST00000509454 IAPPP10997 89 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 SLC25A6P12236 298 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 OPRK1P41145 380 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 AARDQ4LEZ3 155 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 C11orf87Q6NUJ2 197 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 C12orf45Q8N5I9 185 aaPredicted RBP8.78□□□□□ -1
LIMCH1-210ENST00000509454 SLC24A4Q8NFF2 622 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 ZNF502Q8TBZ5 544 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 SCARB1Q8WTV0 552 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 HSPB7Q9UBY9 170 aa8.78□□□□□ -1
LIMCH1-210ENST00000509454 IGHV3-35A0A0C4DH35 117 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 ZNF320A2RRD8 509 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 INS-IGF2F8WCM5 200 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 K7EIM0 57 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 CORTO00230 105 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 OR2C1O95371 312 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 NPY1RP25929 384 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 MFAP4P55083 255 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 IAH1Q2TAA2 248 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 KLK9Q2XQG4 91 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 C9orf66Q5T8R8 295 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 SAMD5Q5TGI4 173 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 ACSM6Q6P461 480 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 OR4C12Q96R67 309 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 KLK9Q9UKQ9 250 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 PKD1L1Q8TDX9 2849 aa8.77□□□□□ -1.01
LIMCH1-210ENST00000509454 MPTX1A8MV57 137 aa8.76□□□□□ -1.01
LIMCH1-210ENST00000509454 FAM90A26D6RGX4 464 aa8.76□□□□□ -1.01
LIMCH1-210ENST00000509454 PITX3O75364 302 aa8.76□□□□□ -1.01
LIMCH1-210ENST00000509454 KLF5Q13887 457 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-210ENST00000509454 FAM106AQ4KMX7 169 aa8.76□□□□□ -1.01
LIMCH1-210ENST00000509454 PDLIM3Q53GG5 364 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-210ENST00000509454 NOXA1Q86UR1 476 aa8.76□□□□□ -1.01
LIMCH1-210ENST00000509454 DUSP18Q8NEJ0 188 aa8.76□□□□□ -1.01
LIMCH1-210ENST00000509454 RPS10-NUDT3A0A1W2PQS6 291 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 I3L2K1 104 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 TGOLN2O43493 480 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 SYNGR2O43760 224 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 GNG7O60262 68 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 PRAF2O60831 178 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 IFNA4P05014 189 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 IL5P05113 134 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 SPNP16150 400 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 NKX2-1P43699 371 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 RPP30P78346 268 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 C2orf83Q53S99 150 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 OR9G4Q8NGQ1 327 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 BSCL2Q96G97 398 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 OR10C1Q96KK4 312 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 CIB3Q96Q77 187 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 GAR1Q9NY12 217 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 PEMTQ9UBM1 199 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 U3KQ87 197 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 NBEAL1Q6ZS30 2694 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 NUPL2O15504 423 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 SSSCA1O60232 199 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 SCGB2A1O75556 95 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 PRB2P02812 416 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 NPBWR1P48145 328 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 DEFA6Q01524 100 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 GSG1LQ6UXU4 331 aa8.75□□□□□ -1.01
LIMCH1-210ENST00000509454 ZBTB8BQ8NAP8 495 aaPredicted RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms