RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 E5RGE8 158 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 SYNGR2O43760 224 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 NXPH3O95157 252 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 GNB1P62873 340 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 RUNX1Q01196 453 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 PRSS8Q16651 343 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 PPP1R27Q86WC6 154 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 CIB3Q96Q77 187 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 B9D2Q9BPU9 175 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 FAM103A1Q9BTL3 118 aaKnown RBP13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 RNF126Q9BV68 326 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 ZNF430Q9H8G1 570 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 OR5AC2Q9NZP5 309 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 OR51B2Q9Y5P1 312 aa13.95□□□□□ -0.18
SQSTM1-209ENST00000504627 CA2P00918 260 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 IFNA17P01571 189 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 CRIP2P52943 208 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 HSPE1P61604 102 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 UNQ5815/PRO19632Q6UWF5 114 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 ZNF562Q6V9R5 426 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 OR1L8Q8NGR8 309 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 DCUN1D4Q92564 292 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 PRR25Q96S07 402 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 COMMD5Q9GZQ3 224 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 MAGT1Q9H0U3 335 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 TNFSF18Q9UNG2 199 aa13.94□□□□□ -0.18
SQSTM1-209ENST00000504627 DNAH9Q9NYC9 4486 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 L7N2F9 121 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 SOX15O60248 233 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 P2RY1P47900 373 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 TAS2R30P59541 319 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 VAMP2P63027 116 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 PRCDQ00LT1 54 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 ZNF345Q14585 488 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 MRGPRG-AS1Q2M3A8 158 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 ZNF546Q86UE3 836 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 LFNGQ8NES3 379 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 GRPEL2Q8TAA5 225 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 RBKSQ9H477 322 aa13.93□□□□□ -0.18
SQSTM1-209ENST00000504627 CEBPZOSA8MTT3 80 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 ARPC5O15511 151 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 TSC22D2O75157 780 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 ACTL6BO94805 426 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 EGR2P11161 476 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 HOXA1P49639 335 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 INSL3P51460 131 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 AKIRIN2Q53H80 203 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 C19orf54Q5BKX5 351 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 DTD1Q8TEA8 209 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 ARPC1AQ92747 370 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 MS4A10Q96PG2 267 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 AQP10Q96PS8 301 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 PLEKHA3Q9HB20 300 aa13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 LYRM2Q9NU23 88 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-209ENST00000504627 INS-IGF2F8WCM5 200 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 LINC01619G3V211 115 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 OVOL1O14753 267 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 CNIH1O95406 144 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 NUP62P37198 522 aaPredicted RBP13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 NKX2-5P52952 324 aaPredicted RBP13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 TPPP2P59282 170 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 OR2F1Q13607 317 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 FXYD3Q14802 87 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 ASPHD1Q5U4P2 390 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 C9orf62Q8N4C0 152 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 INO80EQ8NBZ0 244 aaPredicted RBP13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 SMIM8Q96KF7 97 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 ENY2Q9NPA8 101 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 NDUFA4L2Q9NRX3 87 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 ZNF355PQ9NSJ1 428 aa13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 ZNF256Q9Y2P7 627 aaPredicted RBP13.91□□□□□ -0.18
SQSTM1-209ENST00000504627 COL7A1Q02388 2944 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 TEX50A0A1B0GTY4 177 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 RNF222A6NCQ9 220 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 SAP30O75446 220 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 IGHV3-11P01762 117 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 LGALS1P09382 135 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 IAPPP10997 89 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 RPL27AP46776 148 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 TNXAQ16473 311 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 ACOT7LQ6ZUV0 252 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 OR2C3Q8N628 320 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 SRSF8Q9BRL6 282 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 MFFQ9GZY8 342 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 SLA2Q9H6Q3 261 aa13.9□□□□□ -0.18
SQSTM1-209ENST00000504627 TMEM50AO95807 157 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 MYOD1P15172 320 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 CAV2P51636 162 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 SLURP1P55000 103 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 PAX9P55771 341 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 PJVKQ0ZLH3 352 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 SPINK9Q5DT21 86 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 C10orf55Q5SWW7 151 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 HSD17B13Q7Z5P4 300 aaPredicted RBP13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 DLX4Q92988 240 aaPredicted RBP13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 SLC25A31Q9H0C2 315 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 HIPK2Q9H2X6 1198 aa13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 LSM4Q9Y4Z0 139 aaKnown RBP13.89□□□□□ -0.19
SQSTM1-209ENST00000504627 IGHV4OR15-8A0A075B7B6 117 aa13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 A0A087WW49 117 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms