RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 Q56UQ5 140 aa14.5□□□□□ -0.09
USP40-217ENST00000496298 PVRIGQ6DKI7 326 aa14.5□□□□□ -0.09
USP40-217ENST00000496298 RBPMS2Q6ZRY4 209 aaKnown RBP14.5□□□□□ -0.09
USP40-217ENST00000496298 ISOC1Q96CN7 298 aa14.5□□□□□ -0.09
USP40-217ENST00000496298 DIRAS2Q96HU8 199 aa14.5□□□□□ -0.09
USP40-217ENST00000496298 RTBDNQ9BSG5 229 aaPredicted RBP14.5□□□□□ -0.09
USP40-217ENST00000496298 CSMD3Q7Z407 3707 aa14.5□□□□□ -0.09
USP40-217ENST00000496298 TSPAN4O14817 238 aa14.49□□□□□ -0.09
USP40-217ENST00000496298 MT-CO2P00403 227 aa14.49□□□□□ -0.09
USP40-217ENST00000496298 UBAC2Q8NBM4 344 aa14.49□□□□□ -0.09
USP40-217ENST00000496298 MISP3Q96FF7 219 aa14.49□□□□□ -0.09
USP40-217ENST00000496298 SPAG8Q99932 426 aaPredicted RBP14.49□□□□□ -0.09
USP40-217ENST00000496298 SLIRPQ9GZT3 109 aaKnown RBP14.49□□□□□ -0.09
USP40-217ENST00000496298 ST8SIA3O43173 380 aa14.48□□□□□ -0.09
USP40-217ENST00000496298 GSTZ1O43708 216 aaPredicted RBP14.48□□□□□ -0.09
USP40-217ENST00000496298 CDS2O95674 445 aa14.48□□□□□ -0.09
USP40-217ENST00000496298 AKR1C2P52895 323 aa14.48□□□□□ -0.09
USP40-217ENST00000496298 RELQ04864 619 aaPredicted RBP14.48□□□□□ -0.09
USP40-217ENST00000496298 AARDQ4LEZ3 155 aa14.48□□□□□ -0.09
USP40-217ENST00000496298 FAAP20Q6NZ36 180 aa14.48□□□□□ -0.09
USP40-217ENST00000496298 OR10C1Q96KK4 312 aa14.48□□□□□ -0.09
USP40-217ENST00000496298 SOSTQ9BQB4 213 aa14.48□□□□□ -0.09
USP40-217ENST00000496298 NXF2Q9GZY0 626 aaKnown RBP14.48□□□□□ -0.09
USP40-217ENST00000496298 TMEM222Q9H0R3 208 aa14.48□□□□□ -0.09
USP40-217ENST00000496298 DISC1C4P0D8 188 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 NUPL2O15504 423 aaKnown RBP14.47□□□□□ -0.09
USP40-217ENST00000496298 AKAIN1P0CW23 69 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 IL18Q14116 193 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 TRIM16LQ309B1 348 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 OR4C16Q8NGL9 310 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 GLYATL2Q8WU03 294 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 C20orf24Q9BUV8 137 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 RETNQ9HD89 108 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 SMPXQ9UHP9 88 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 GPR132Q9UNW8 380 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 TENM2Q9NT68 2774 aa14.47□□□□□ -0.09
USP40-217ENST00000496298 A0A0G2JRQ6 117 aa14.46□□□□□ -0.09
USP40-217ENST00000496298 H3BMQ9 156 aa14.46□□□□□ -0.09
USP40-217ENST00000496298 SNCAP37840 140 aa14.46□□□□□ -0.09
USP40-217ENST00000496298 SPINK9Q5DT21 86 aa14.46□□□□□ -0.09
USP40-217ENST00000496298 LAMTOR1Q6IAA8 161 aa14.46□□□□□ -0.09
USP40-217ENST00000496298 Q6ZRM9 215 aa14.46□□□□□ -0.09
USP40-217ENST00000496298 FAM219AQ8IW50 185 aa14.46□□□□□ -0.09
USP40-217ENST00000496298 SLC35G3Q8N808 338 aa14.46□□□□□ -0.09
USP40-217ENST00000496298 RRNAD1Q96FB5 475 aaKnown RBP14.46□□□□□ -0.09
USP40-217ENST00000496298 RSL24D1Q9UHA3 163 aaKnown RBP14.46□□□□□ -0.09
USP40-217ENST00000496298 C14orf166Q9Y224 244 aaKnown RBP14.46□□□□□ -0.09
USP40-217ENST00000496298 STARD9Q9P2P6 4700 aa14.45□□□□□ -0.1
USP40-217ENST00000496298 IGHV3OR16-8A0A075B7F1 116 aa14.45□□□□□ -0.1
USP40-217ENST00000496298 TEX13DA0A0J9YY54 714 aaPredicted RBP14.45□□□□□ -0.1
USP40-217ENST00000496298 ANKRD20A5PA0PJZ0 165 aa14.45□□□□□ -0.1
USP40-217ENST00000496298 IFNA17P01571 189 aa14.45□□□□□ -0.1
USP40-217ENST00000496298 OR5AC1P0C628 307 aa14.45□□□□□ -0.1
USP40-217ENST00000496298 RNASE2P10153 161 aaKnown RBP14.45□□□□□ -0.1
USP40-217ENST00000496298 LHFPL5Q8TAF8 219 aa14.45□□□□□ -0.1
USP40-217ENST00000496298 PRRT1Q99946 306 aa14.45□□□□□ -0.1
USP40-217ENST00000496298 FAM110AQ9BQ89 295 aa14.45□□□□□ -0.1
USP40-217ENST00000496298 NAA60Q9H7X0 242 aa14.45□□□□□ -0.1
USP40-217ENST00000496298 IGHV7-4-1A0A0J9YVY3 117 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 CRYM-AS1A6NIL9 109 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 ZNF207O43670 478 aaKnown RBP14.44□□□□□ -0.1
USP40-217ENST00000496298 IGHV3-48P01763 117 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 TNFSF8P32971 234 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 ETV6P41212 452 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 DHODHQ02127 395 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 BSXQ3C1V8 233 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 OR52E5Q8NH55 327 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 RBPMSQ93062 196 aaKnown RBP14.44□□□□□ -0.1
USP40-217ENST00000496298 PINX1Q96BK5 328 aaKnown RBP14.44□□□□□ -0.1
USP40-217ENST00000496298 PDCD10Q9BUL8 212 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 GGTLC1Q9BX51 225 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 C6orf62Q9GZU0 229 aaPredicted RBP14.44□□□□□ -0.1
USP40-217ENST00000496298 RYR2Q92736 4967 aa14.44□□□□□ -0.1
USP40-217ENST00000496298 LOC102724200A0A096LPH7 203 aaPredicted RBP14.43□□□□□ -0.1
USP40-217ENST00000496298 CORTO00230 105 aa14.43□□□□□ -0.1
USP40-217ENST00000496298 CHEK1O14757 476 aa14.43□□□□□ -0.1
USP40-217ENST00000496298 GNG7O60262 68 aa14.43□□□□□ -0.1
USP40-217ENST00000496298 NPBWR1P48145 328 aa14.43□□□□□ -0.1
USP40-217ENST00000496298 SUB1P53999 127 aaKnown RBP eCLIP14.43□□□□□ -0.1
USP40-217ENST00000496298 SELENOHQ8IZQ5 122 aaKnown RBP14.43□□□□□ -0.1
USP40-217ENST00000496298 DUSP18Q8NEJ0 188 aa14.43□□□□□ -0.1
USP40-217ENST00000496298 OR51S1Q8NGJ8 323 aa14.43□□□□□ -0.1
USP40-217ENST00000496298 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.43□□□□□ -0.1
USP40-217ENST00000496298 NOL3O60936 208 aaKnown RBP14.42□□□□□ -0.1
USP40-217ENST00000496298 SPCS3P61009 180 aa14.42□□□□□ -0.1
USP40-217ENST00000496298 ODF3L2Q3SX64 289 aa14.42□□□□□ -0.1
USP40-217ENST00000496298 TMEM116Q8NCL8 245 aa14.42□□□□□ -0.1
USP40-217ENST00000496298 RHPN1-AS1Q9BWJ2 59 aa14.42□□□□□ -0.1
USP40-217ENST00000496298 TMEM56-RWDD3S4R434 201 aa14.42□□□□□ -0.1
USP40-217ENST00000496298 FABP12A6NFH5 140 aa14.41□□□□□ -0.1
USP40-217ENST00000496298 OR4C46A6NHA9 309 aa14.41□□□□□ -0.1
USP40-217ENST00000496298 TMEM50AO95807 157 aa14.41□□□□□ -0.1
USP40-217ENST00000496298 HOXA1P49639 335 aaPredicted RBP14.41□□□□□ -0.1
USP40-217ENST00000496298 FAM90A2PQ658T7 463 aa14.41□□□□□ -0.1
USP40-217ENST00000496298 ZFAND6Q6FIF0 208 aa14.41□□□□□ -0.1
USP40-217ENST00000496298 TOMM20LQ6UXN7 152 aa14.41□□□□□ -0.1
USP40-217ENST00000496298 MCFD2Q8NI22 146 aa14.41□□□□□ -0.1
USP40-217ENST00000496298 RNASE11Q8TAA1 199 aaKnown RBP14.41□□□□□ -0.1
USP40-217ENST00000496298 GALNT14Q96FL9 552 aa14.41□□□□□ -0.1
USP40-217ENST00000496298 RNF2Q99496 336 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms