RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CTSGP08311 255 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 CD7P09564 240 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 NHLRC4P0CG21 123 aaPredicted RBP13.65□□□□□ -0.22
COL9A3-214ENST00000490398 AKR1C4P17516 323 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 DHODHQ02127 395 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 Q56UQ5 140 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 BTNL8Q6UX41 500 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 OR2K2Q8NGT1 345 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 RNASE11Q8TAA1 199 aaKnown RBP13.65□□□□□ -0.22
COL9A3-214ENST00000490398 TMEM190Q8WZ59 177 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 RBPMSQ93062 196 aaKnown RBP13.65□□□□□ -0.22
COL9A3-214ENST00000490398 BSCL2Q96G97 398 aaPredicted RBP13.65□□□□□ -0.22
COL9A3-214ENST00000490398 SRRQ9GZT4 340 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 WFDC10AQ9H1F0 79 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 TMEM56-RWDD3S4R434 201 aa13.65□□□□□ -0.22
COL9A3-214ENST00000490398 B3GALNT1O75752 331 aa13.64□□□□□ -0.23
COL9A3-214ENST00000490398 ATG12O94817 140 aa13.64□□□□□ -0.23
COL9A3-214ENST00000490398 RNASE2P10153 161 aaKnown RBP13.64□□□□□ -0.23
COL9A3-214ENST00000490398 ERHP84090 104 aaKnown RBP13.64□□□□□ -0.23
COL9A3-214ENST00000490398 TMEM61Q8N0U2 210 aa13.64□□□□□ -0.23
COL9A3-214ENST00000490398 TOMM5Q8N4H5 51 aa13.64□□□□□ -0.23
COL9A3-214ENST00000490398 SLC35G3Q8N808 338 aa13.64□□□□□ -0.23
COL9A3-214ENST00000490398 OR1L6Q8NGR2 347 aa13.64□□□□□ -0.23
COL9A3-214ENST00000490398 PINX1Q96BK5 328 aaKnown RBP13.64□□□□□ -0.23
COL9A3-214ENST00000490398 MRPL36Q9P0J6 103 aaKnown RBP13.64□□□□□ -0.23
COL9A3-214ENST00000490398 CACNG5Q9UF02 275 aa13.64□□□□□ -0.23
COL9A3-214ENST00000490398 U3KQK5 164 aa13.64□□□□□ -0.23
COL9A3-214ENST00000490398 INS-IGF2F8WCM5 200 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 ZNF207O43670 478 aaKnown RBP13.63□□□□□ -0.23
COL9A3-214ENST00000490398 NXPH3O95157 252 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 C8orf88P0DMB2 117 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 BAK1Q16611 211 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 MLANAQ16655 118 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 GUCA2BQ16661 112 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 AARDQ4LEZ3 155 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 PVRIGQ6DKI7 326 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 SGPP2Q8IWX5 399 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 GALNT14Q96FL9 552 aa13.63□□□□□ -0.23
COL9A3-214ENST00000490398 SDHCQ99643 169 aaPredicted RBP13.63□□□□□ -0.23
COL9A3-214ENST00000490398 TECRQ9NZ01 308 aaKnown RBP13.63□□□□□ -0.23
COL9A3-214ENST00000490398 HOXA1P49639 335 aaPredicted RBP13.62□□□□□ -0.23
COL9A3-214ENST00000490398 CD81P60033 236 aa13.62□□□□□ -0.23
COL9A3-214ENST00000490398 LYZL2Q7Z4W2 148 aa13.62□□□□□ -0.23
COL9A3-214ENST00000490398 PLECQ15149 4684 aaKnown RBP13.61□□□□□ -0.23
COL9A3-214ENST00000490398 A8MZ25 164 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 SCAF4O95104 1147 aaKnown RBP13.61□□□□□ -0.23
COL9A3-214ENST00000490398 MFAP4P55083 255 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 ZNF57Q68EA5 555 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-214ENST00000490398 SPSB3Q6PJ21 355 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 TMED4Q7Z7H5 227 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 FAM219AQ8IW50 185 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 DEFB125Q8N687 156 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 ATP6V0BQ99437 205 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 NEURL2Q9BR09 285 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 PDCD10Q9BUL8 212 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 C20orf24Q9BUV8 137 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 FNDC4Q9H6D8 234 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-214ENST00000490398 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-214ENST00000490398 UFC1Q9Y3C8 167 aa13.61□□□□□ -0.23
COL9A3-214ENST00000490398 NBEAL2Q6ZNJ1 2754 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 NDUFA4O00483 81 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 FCGR2BP31994 310 aaPredicted RBP13.6□□□□□ -0.23
COL9A3-214ENST00000490398 SNCAP37840 140 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 ELLP55199 621 aaPredicted RBP13.6□□□□□ -0.23
COL9A3-214ENST00000490398 SPCS3P61009 180 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 BSXQ3C1V8 233 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 SPANXN2Q5MJ10 180 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 GTSCR1Q86UQ5 136 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 TMEM170AQ8WVE7 144 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 SCGB3A2Q96PL1 93 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 PALMDQ9NP74 551 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 MRPL27Q9P0M9 148 aaKnown RBP13.6□□□□□ -0.23
COL9A3-214ENST00000490398 RYR2Q92736 4967 aa13.6□□□□□ -0.23
COL9A3-214ENST00000490398 FAUP35544 74 aaKnown RBP13.59□□□□□ -0.23
COL9A3-214ENST00000490398 CCR6P51684 374 aa13.59□□□□□ -0.23
COL9A3-214ENST00000490398 AP3S2P59780 193 aa13.59□□□□□ -0.23
COL9A3-214ENST00000490398 ANKRD55Q3KP44 614 aa13.59□□□□□ -0.23
COL9A3-214ENST00000490398 NMSQ5H8A3 153 aa13.59□□□□□ -0.23
COL9A3-214ENST00000490398 OR52E5Q8NH55 327 aa13.59□□□□□ -0.23
COL9A3-214ENST00000490398 IL22RA2Q969J5 263 aa13.59□□□□□ -0.23
COL9A3-214ENST00000490398 RCHY1Q96PM5 261 aa13.59□□□□□ -0.23
COL9A3-214ENST00000490398 KCNIP3Q9Y2W7 256 aa13.59□□□□□ -0.23
COL9A3-214ENST00000490398 CSMD3Q7Z407 3707 aa13.59□□□□□ -0.23
COL9A3-214ENST00000490398 IGHV3-49A0A0A0MS15 119 aa13.58□□□□□ -0.24
COL9A3-214ENST00000490398 LINC00854A0A1B0GVQ3 168 aa13.58□□□□□ -0.24
COL9A3-214ENST00000490398 HAGHQ16775 308 aa13.58□□□□□ -0.24
COL9A3-214ENST00000490398 MARC2Q969Z3 335 aa13.58□□□□□ -0.24
COL9A3-214ENST00000490398 WWC2-AS2Q96NR7 200 aa13.58□□□□□ -0.24
COL9A3-214ENST00000490398 TXN2Q99757 166 aa13.58□□□□□ -0.24
COL9A3-214ENST00000490398 TM2D3Q9BRN9 247 aa13.58□□□□□ -0.24
COL9A3-214ENST00000490398 DAZ1Q9NQZ3 744 aaKnown RBP13.58□□□□□ -0.24
COL9A3-214ENST00000490398 A0A0B4J2A0 478 aa13.57□□□□□ -0.24
COL9A3-214ENST00000490398 NUPL2O15504 423 aaKnown RBP13.57□□□□□ -0.24
COL9A3-214ENST00000490398 LINC00322Q6ZN03 302 aaPredicted RBP13.57□□□□□ -0.24
COL9A3-214ENST00000490398 ENY2Q9NPA8 101 aa13.57□□□□□ -0.24
COL9A3-214ENST00000490398 HEYLQ9NQ87 328 aaPredicted RBP13.57□□□□□ -0.24
COL9A3-214ENST00000490398 SHPKQ9UHJ6 478 aa13.57□□□□□ -0.24
COL9A3-214ENST00000490398 DNAH1Q9P2D7 4330 aa13.57□□□□□ -0.24
COL9A3-214ENST00000490398 RBMY1BA6NDE4 496 aaKnown RBP13.56□□□□□ -0.24
COL9A3-214ENST00000490398 RBMY1EA6NEQ0 496 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms