RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 USP9XQ93008 2570 aaPredicted RBP0.75□□□□□ -2.29
CPSF3-205ENST00000489629 CHD8Q9HCK8 2581 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 RTTNQ86VV8 2226 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 PIK3C2GO75747 1445 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 EML6Q6ZMW3 1958 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 NUP155O75694 1391 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 MYH2Q9UKX2 1941 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 EXOC1LA0A1B0GW35 172 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HMSDA8MTL9 139 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 OR2J2O76002 312 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 ZNF682O95780 498 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 C1QAP02745 245 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 SERPINA7P05543 415 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 GPX1P07203 203 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 MSMBP08118 114 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 TRGC1P0CF51 173 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 SMIM10L2AP0DMW4 78 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 SMIM10L2BP0DMW5 78 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 CRYGAP11844 174 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 CYBAP13498 195 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 RPS4Y1P22090 263 aaKnown RBP0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HIST1H2BOP23527 126 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 PSMB8P28062 276 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HIST1H2BBP33778 126 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 G6PCP35575 357 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 ANP32AP39687 249 aaKnown RBP0.74□□□□□ -2.29
CPSF3-205ENST00000489629 EIF2B2P49770 351 aaKnown RBP0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HIST1H2BDP58876 126 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 TMEM258P61165 79 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HIST1H2BCP62807 126 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 MRPS15P82914 257 aaKnown RBP0.74□□□□□ -2.29
CPSF3-205ENST00000489629 REEP5Q00765 189 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 GLO1Q04760 184 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 EDDM3AQ14507 147 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 TAF1AQ15573 450 aaPredicted RBP0.74□□□□□ -2.29
CPSF3-205ENST00000489629 MOGQ16653 247 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HIST2H2BEQ16778 126 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 IAH1Q2TAA2 248 aaPredicted RBP0.74□□□□□ -2.29
CPSF3-205ENST00000489629 C12orf74Q32Q52 190 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.74□□□□□ -2.29
CPSF3-205ENST00000489629 IBA57Q5T440 356 aaKnown RBP0.74□□□□□ -2.29
CPSF3-205ENST00000489629 C9orf64Q5T6V5 341 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 FAM173BQ6P4H8 233 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 SLC36A1Q7Z2H8 476 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 BPIFA4PQ86YQ2 179 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 OR52L1Q8NGH7 329 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 TERB2Q8NHR7 220 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 CDC26Q8NHZ8 85 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 SLC7A6Q92536 515 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HIST1H2BHQ93079 126 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 TOMM6Q96B49 74 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 Q96M85 177 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 SIGMAR1Q99720 223 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HIST1H2BNQ99877 126 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 HIST1H2BMQ99879 126 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 PRTFDC1Q9NRG1 225 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 BAIAP2Q9UQB8 552 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 LHFPL6Q9Y693 200 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 TMEM56-RWDD3S4R434 201 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 COL6A3P12111 3177 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 DENND4CQ5VZ89 1909 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 ANAPC1Q9H1A4 1944 aa0.74□□□□□ -2.29
CPSF3-205ENST00000489629 ITPR3Q14573 2671 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 ADGRL3Q9HAR2 1447 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 TRBV10-2A0A0K0K1G8 114 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 MEIS3P1A6NDR6 274 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 DPRXA6NFQ7 191 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 SLC22A1O15245 554 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 ORC5O43913 435 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 NOS1APO75052 506 aaPredicted RBP0.73□□□□□ -2.29
CPSF3-205ENST00000489629 CRYZL1O95825 349 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 SERPINA1P01009 418 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 CST2P09228 141 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 ZNF705BP0CI00 300 aaPredicted RBP0.73□□□□□ -2.29
CPSF3-205ENST00000489629 SRIP30626 198 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 SERPINB9P50453 376 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 CDC42P60953 191 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 RPL22L1Q6P5R6 122 aaKnown RBP0.73□□□□□ -2.29
CPSF3-205ENST00000489629 COA5Q86WW8 74 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 CLVS1Q8IUQ0 354 aaPredicted RBP0.73□□□□□ -2.29
CPSF3-205ENST00000489629 C15orf53Q8NAA6 179 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 OR51A2Q8NGJ7 313 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 OR13C4Q8NGS5 318 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 OR10X1Q8NGY0 326 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 PFN4Q8NHR9 129 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 ZNF563Q8TA94 476 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 SLC25A40Q8TBP6 338 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 CHMP6Q96FZ7 201 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 DOK5Q9P104 306 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 A0A0C4DFX4 3053 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 EXPH5Q8NEV8 1989 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 VCANP13611 3396 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 ANKRD17O75179 2603 aaKnown RBP0.73□□□□□ -2.29
CPSF3-205ENST00000489629 GLI3P10071 1580 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 CEP192Q8TEP8 1941 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 HECTD1Q9ULT8 2610 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 SDK1Q7Z5N4 2213 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 OBSL1O75147 1896 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 MED13Q9UHV7 2174 aa0.73□□□□□ -2.29
CPSF3-205ENST00000489629 KIF1BO60333 1816 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms