RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 FAM223AQ8IWN6 122 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 NECAP1Q8NC96 275 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 OR4D5Q8NGN0 318 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 OR1P1Q8NH06 330 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 SPATA3Q8NHX4 192 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 UBE2E2Q96LR5 201 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 P2RX4Q99571 388 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 MAGT1Q9H0U3 335 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 MGAT4CQ9UBM8 478 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 FBXL7Q9UJT9 491 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 U3KQ87 197 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 PLXNB1O43157 2135 aa8.02□□□□□ -1.13
SKA1-204ENST00000488454 TNCP24821 2201 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 TRBV9A0A0B4J1U6 114 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 L7N2F9 121 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 CORTO00230 105 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 SIX6O95475 246 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 RLN2P04090 185 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 IAPPP10997 89 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 ATP5IP56385 69 aaPredicted RBP8.01□□□□□ -1.13
SKA1-204ENST00000488454 POLR2GP62487 172 aaKnown RBP eCLIP8.01□□□□□ -1.13
SKA1-204ENST00000488454 RPL23AP62750 156 aaKnown RBP8.01□□□□□ -1.13
SKA1-204ENST00000488454 VAMP2P63027 116 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 C2orf68Q2NKX9 166 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 ZNF491Q8N8L2 437 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 KLHL30-AS1Q8NEE0 82 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 CXorf58Q96LI9 332 aa8.01□□□□□ -1.13
SKA1-204ENST00000488454 PAIP2BQ9ULR5 123 aaKnown RBP8.01□□□□□ -1.13
SKA1-204ENST00000488454 IGLV11-55A0A075B6I3 123 aa8□□□□□ -1.13
SKA1-204ENST00000488454 M0QZ24 198 aa8□□□□□ -1.13
SKA1-204ENST00000488454 SSSCA1O60232 199 aa8□□□□□ -1.13
SKA1-204ENST00000488454 NDUFB8O95169 186 aa8□□□□□ -1.13
SKA1-204ENST00000488454 IFNA4P05014 189 aa8□□□□□ -1.13
SKA1-204ENST00000488454 PVALBP20472 110 aaPredicted RBP8□□□□□ -1.13
SKA1-204ENST00000488454 NPY1RP25929 384 aa8□□□□□ -1.13
SKA1-204ENST00000488454 RAB11AP62491 216 aa8□□□□□ -1.13
SKA1-204ENST00000488454 C15orf32Q32M92 178 aa8□□□□□ -1.13
SKA1-204ENST00000488454 FAM209BQ5JX69 171 aa8□□□□□ -1.13
SKA1-204ENST00000488454 C19orf35Q6ZS72 473 aa8□□□□□ -1.13
SKA1-204ENST00000488454 ZNF114Q8NC26 417 aa8□□□□□ -1.13
SKA1-204ENST00000488454 SLC24A4Q8NFF2 622 aa8□□□□□ -1.13
SKA1-204ENST00000488454 EEF1AKMT3Q96AZ1 226 aa8□□□□□ -1.13
SKA1-204ENST00000488454 PINX1Q96BK5 328 aaKnown RBP8□□□□□ -1.13
SKA1-204ENST00000488454 OR5B12Q96R08 314 aa8□□□□□ -1.13
SKA1-204ENST00000488454 RAB40CQ96S21 281 aa8□□□□□ -1.13
SKA1-204ENST00000488454 NMES1Q9C002 83 aa8□□□□□ -1.13
SKA1-204ENST00000488454 PSENENQ9NZ42 101 aa8□□□□□ -1.13
SKA1-204ENST00000488454 LSM5Q9Y4Y9 91 aaKnown RBP8□□□□□ -1.13
SKA1-204ENST00000488454 TRBV7-1A0A0A6YYK4 115 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 RPS10-NUDT3A0A1W2PQS6 291 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 IGHV3-11P01762 117 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 MBPP02686 304 aaPredicted RBP7.99□□□□□ -1.13
SKA1-204ENST00000488454 OR8U8P0C7N1 319 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 RNASE2P10153 161 aaKnown RBP7.99□□□□□ -1.13
SKA1-204ENST00000488454 S100A10P60903 97 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 RRAS2P62070 204 aaPredicted RBP7.99□□□□□ -1.13
SKA1-204ENST00000488454 EXOSC2Q13868 293 aaKnown RBP7.99□□□□□ -1.13
SKA1-204ENST00000488454 KIAA0141Q14154 515 aaPredicted RBP7.99□□□□□ -1.13
SKA1-204ENST00000488454 FCN2Q15485 313 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 KLK9Q2XQG4 91 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 C2orf83Q53S99 150 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 SPANXN5Q5MJ07 72 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 HIST2H2BDQ6DRA6 164 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 OR4F17Q8NGA8 305 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 MYOZ3Q8TDC0 251 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 VN1R17PQ8TDU5 208 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 C4orf3Q8WVX3 66 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 DPF1Q92782 380 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 OR4F4Q96R69 305 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 KRTAP4-8Q9BYQ9 185 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 GNB4Q9HAV0 340 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 KLK9Q9UKQ9 250 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 STRAPQ9Y3F4 350 aaKnown RBP7.99□□□□□ -1.13
SKA1-204ENST00000488454 COL6A5A8TX70 2615 aa7.99□□□□□ -1.13
SKA1-204ENST00000488454 ANKRD34BA5PLL1 514 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 K7EPK0 472 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 MT-CO2P00403 227 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 LGALS1P09382 135 aaKnown RBP7.98□□□□□ -1.13
SKA1-204ENST00000488454 OPRK1P41145 380 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 BCAP31P51572 246 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 MFAP2P55001 183 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 H2BFSP57053 126 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 TAS2R30P59541 319 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 DEFA5Q01523 94 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 RAB32Q13637 225 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 BSXQ3C1V8 233 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 LRRC37A5PQ49AS3 106 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 ETFRF1Q6IPR1 90 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 OR1N2Q8NGR9 330 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 RNASEH2CQ8TDP1 164 aaKnown RBP7.98□□□□□ -1.13
SKA1-204ENST00000488454 SMIM8Q96KF7 97 aa7.98□□□□□ -1.13
SKA1-204ENST00000488454 RANGRFQ9HD47 186 aaPredicted RBP7.98□□□□□ -1.13
SKA1-204ENST00000488454 GAR1Q9NY12 217 aaKnown RBP7.98□□□□□ -1.13
SKA1-204ENST00000488454 PEF1Q9UBV8 284 aaKnown RBP7.98□□□□□ -1.13
SKA1-204ENST00000488454 RCL1Q9Y2P8 373 aaKnown RBP7.98□□□□□ -1.13
SKA1-204ENST00000488454 IGHV3-21A0A0B4J1V1 117 aa7.97□□□□□ -1.13
SKA1-204ENST00000488454 CCL24O00175 119 aa7.97□□□□□ -1.13
SKA1-204ENST00000488454 IGHV3-23P01764 117 aa7.97□□□□□ -1.13
SKA1-204ENST00000488454 HSPB1P04792 205 aaKnown RBP7.97□□□□□ -1.13
SKA1-204ENST00000488454 PET100P0DJ07 73 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms