RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 C5orf66Q9H5L9 145 aa13.25□□□□□ -0.29
COL9A3-212ENST00000481800 ENY2Q9NPA8 101 aa13.25□□□□□ -0.29
COL9A3-212ENST00000481800 A0A0B4J293 547 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 F8W735 103 aaPredicted RBP13.24□□□□□ -0.29
COL9A3-212ENST00000481800 I3L2K1 104 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 ST8SIA3O43173 380 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 YIF1AO95070 293 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 MT-CO2P00403 227 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 LYL1P12980 280 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 ADMP35318 185 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 SUB1P53999 127 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL9A3-212ENST00000481800 SURF2Q15527 256 aaPredicted RBP13.24□□□□□ -0.29
COL9A3-212ENST00000481800 LAMTOR1Q6IAA8 161 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 OR4C16Q8NGL9 310 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 MCFD2Q8NI22 146 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 PRRT1Q99946 306 aa13.24□□□□□ -0.29
COL9A3-212ENST00000481800 IGHV3OR16-8A0A075B7F1 116 aa13.23□□□□□ -0.29
COL9A3-212ENST00000481800 FABP12A6NFH5 140 aa13.23□□□□□ -0.29
COL9A3-212ENST00000481800 K7EMT4 169 aa13.23□□□□□ -0.29
COL9A3-212ENST00000481800 GSTZ1O43708 216 aaPredicted RBP13.23□□□□□ -0.29
COL9A3-212ENST00000481800 CTSGP08311 255 aa13.23□□□□□ -0.29
COL9A3-212ENST00000481800 OR5AC1P0C628 307 aa13.23□□□□□ -0.29
COL9A3-212ENST00000481800 P0C879 139 aa13.23□□□□□ -0.29
COL9A3-212ENST00000481800 HOXA1P49639 335 aaPredicted RBP13.23□□□□□ -0.29
COL9A3-212ENST00000481800 LINC00322Q6ZN03 302 aaPredicted RBP13.23□□□□□ -0.29
COL9A3-212ENST00000481800 RTBDNQ9BSG5 229 aaPredicted RBP13.23□□□□□ -0.29
COL9A3-212ENST00000481800 SLIRPQ9GZT3 109 aaKnown RBP13.23□□□□□ -0.29
COL9A3-212ENST00000481800 TMEM222Q9H0R3 208 aa13.23□□□□□ -0.29
COL9A3-212ENST00000481800 NAA60Q9H7X0 242 aa13.23□□□□□ -0.29
COL9A3-212ENST00000481800 ANKRD20A5PA0PJZ0 165 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 RBMY1BA6NDE4 496 aaKnown RBP13.22□□□□□ -0.29
COL9A3-212ENST00000481800 RBMY1EA6NEQ0 496 aaKnown RBP13.22□□□□□ -0.29
COL9A3-212ENST00000481800 C15orf62A8K5M9 175 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 ZNF207O43670 478 aaKnown RBP13.22□□□□□ -0.29
COL9A3-212ENST00000481800 GNG7O60262 68 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 IGHV3-48P01763 117 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 RBMY1DP0C7P1 496 aaKnown RBP13.22□□□□□ -0.29
COL9A3-212ENST00000481800 FCGR2BP31994 310 aaPredicted RBP13.22□□□□□ -0.29
COL9A3-212ENST00000481800 ETV6P41212 452 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 DHODHQ02127 395 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 FAM219AQ8IW50 185 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 OR51S1Q8NGJ8 323 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 SPAG8Q99932 426 aaPredicted RBP13.22□□□□□ -0.29
COL9A3-212ENST00000481800 SCP2D1Q9UJQ7 156 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 GPR132Q9UNW8 380 aa13.22□□□□□ -0.29
COL9A3-212ENST00000481800 HUWE1Q7Z6Z7 4374 aaKnown RBP13.22□□□□□ -0.29
COL9A3-212ENST00000481800 CCDC160A6NGH7 325 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 INS-IGF2F8WCM5 200 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 CDS2O95674 445 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 TNFSF8P32971 234 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 NPBWR1P48145 328 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 CASC10Q5T4H9 136 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 DUSP18Q8NEJ0 188 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 GLYATL2Q8WU03 294 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 RBPMSQ93062 196 aaKnown RBP13.21□□□□□ -0.29
COL9A3-212ENST00000481800 SCGB3A2Q96PL1 93 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 HIPK2Q9H2X6 1198 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 MCUBQ9NWR8 336 aa13.21□□□□□ -0.29
COL9A3-212ENST00000481800 STAB2Q8WWQ8 2551 aa13.21□□□□□ -0.3
COL9A3-212ENST00000481800 A0A0G2JRQ6 117 aa13.2□□□□□ -0.3
COL9A3-212ENST00000481800 CORTO00230 105 aa13.2□□□□□ -0.3
COL9A3-212ENST00000481800 TSPAN4O14817 238 aa13.2□□□□□ -0.3
COL9A3-212ENST00000481800 NXF2Q9GZY0 626 aaKnown RBP13.2□□□□□ -0.3
COL9A3-212ENST00000481800 EDA2RQ9HAV5 297 aa13.2□□□□□ -0.3
COL9A3-212ENST00000481800 RETNQ9HD89 108 aa13.2□□□□□ -0.3
COL9A3-212ENST00000481800 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.2□□□□□ -0.3
COL9A3-212ENST00000481800 KCNIP3Q9Y2W7 256 aa13.2□□□□□ -0.3
COL9A3-212ENST00000481800 CRYM-AS1A6NIL9 109 aa13.19□□□□□ -0.3
COL9A3-212ENST00000481800 SPCS3P61009 180 aa13.19□□□□□ -0.3
COL9A3-212ENST00000481800 TMEM268Q5VZI3 342 aa13.19□□□□□ -0.3
COL9A3-212ENST00000481800 SELENOHQ8IZQ5 122 aaKnown RBP13.19□□□□□ -0.3
COL9A3-212ENST00000481800 GGTLC1Q9BX51 225 aa13.19□□□□□ -0.3
COL9A3-212ENST00000481800 SMPXQ9UHP9 88 aa13.19□□□□□ -0.3
COL9A3-212ENST00000481800 LOC102724200A0A096LPH7 203 aaPredicted RBP13.18□□□□□ -0.3
COL9A3-212ENST00000481800 TRAV14DV4A0A0A6YYC5 116 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 IGHV7-4-1A0A0J9YVY3 117 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 OR4C46A6NHA9 309 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 RNASE2P10153 161 aaKnown RBP13.18□□□□□ -0.3
COL9A3-212ENST00000481800 Q6ZRM9 215 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 TMEM116Q8NCL8 245 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 LHFPL5Q8TAF8 219 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 FAM110AQ9BQ89 295 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 SOSTQ9BQB4 213 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 GINS3Q9BRX5 216 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 RHPN1-AS1Q9BWJ2 59 aa13.18□□□□□ -0.3
COL9A3-212ENST00000481800 SCGB2A1O75556 95 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 S100A5P33763 92 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 FAUP35544 74 aaKnown RBP13.17□□□□□ -0.3
COL9A3-212ENST00000481800 OPRK1P41145 380 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 PYDC2Q56P42 97 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 ZFAND6Q6FIF0 208 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 OR52E5Q8NH55 327 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 GPR146Q96CH1 333 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 OR10C1Q96KK4 312 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 CACNG5Q9UF02 275 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 UBQLN2Q9UHD9 624 aa13.17□□□□□ -0.3
COL9A3-212ENST00000481800 IGHV3-49A0A0A0MS15 119 aa13.16□□□□□ -0.3
COL9A3-212ENST00000481800 CHEK1O14757 476 aa13.16□□□□□ -0.3
COL9A3-212ENST00000481800 AKR1C4P17516 323 aa13.16□□□□□ -0.3
COL9A3-212ENST00000481800 BMI1P35226 326 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms