RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 TNRC6BQ9UPQ9 1833 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 UBE2L3P68036 154 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 HES3Q5TGS1 186 aa15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 MEGF9Q9H1U4 602 aa15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 K7ERU9 68 aa15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 SMPD2O60906 423 aa15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 NUDT11Q96G61 164 aa15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 CYC1P08574 325 aa15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 GABRA6Q16445 453 aa15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 ZNF766Q5HY98 468 aa15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 RPH3ALQ9UNE2 315 aa15.41■□□□□ 0.06
CCDC88B-207ENST00000479965 SP1P08047 785 aa15.4■□□□□ 0.06
CCDC88B-207ENST00000479965 MPV17P39210 176 aa15.4■□□□□ 0.06
CCDC88B-207ENST00000479965 TAS2R45P59539 299 aa15.4■□□□□ 0.06
CCDC88B-207ENST00000479965 SSX8Q7RTT4 187 aa15.4■□□□□ 0.06
CCDC88B-207ENST00000479965 IGF2BP2-AS1Q96M15 143 aa15.4■□□□□ 0.06
CCDC88B-207ENST00000479965 OR2V2Q96R30 315 aa15.4■□□□□ 0.06
CCDC88B-207ENST00000479965 SAP30O75446 220 aa15.4■□□□□ 0.06
CCDC88B-207ENST00000479965 NANOS1Q8WY41 292 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-207ENST00000479965 SLC25A10Q9UBX3 287 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-207ENST00000479965 LEPROTL1O95214 131 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 SRFP11831 508 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 MRPL49Q13405 166 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 ACP7Q6ZNF0 438 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 DEFB125Q8N687 156 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 IGKV1OR2-108A0A075B7D4 117 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 TRAV8-6A0A0B4J262 113 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 APOA2P02652 100 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 TCF24Q7RTU0 167 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 OR9G1Q8NH87 305 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 ST20Q9HBF5 79 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 ZNF137PP52743 207 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 MORN5Q5VZ52 161 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 C12orf54Q6X4T0 127 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 PPP1R32Q7Z5V6 425 aa15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 AMMECR1Q9Y4X0 333 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-207ENST00000479965 SYS1-DBNDD2H3BUS1 97 aa15.38■□□□□ 0.05
CCDC88B-207ENST00000479965 PYYP10082 97 aa15.38■□□□□ 0.05
CCDC88B-207ENST00000479965 ZNF134P52741 427 aa15.38■□□□□ 0.05
CCDC88B-207ENST00000479965 COMMD5Q9GZQ3 224 aa15.38■□□□□ 0.05
CCDC88B-207ENST00000479965 C15orf61A6NNL5 157 aa15.38■□□□□ 0.05
CCDC88B-207ENST00000479965 WISP2O76076 250 aa15.38■□□□□ 0.05
CCDC88B-207ENST00000479965 ADH4P08319 380 aa15.38■□□□□ 0.05
CCDC88B-207ENST00000479965 ZNF138P52744 262 aa15.38■□□□□ 0.05
CCDC88B-207ENST00000479965 HSPE1P61604 102 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-207ENST00000479965 UTF1Q5T230 341 aa15.37■□□□□ 0.05
CCDC88B-207ENST00000479965 B4GALT7Q9UBV7 327 aa15.37■□□□□ 0.05
CCDC88B-207ENST00000479965 SVILO95425 2214 aa15.37■□□□□ 0.05
CCDC88B-207ENST00000479965 SARAFQ96BY9 339 aa15.37■□□□□ 0.05
CCDC88B-207ENST00000479965 URB1-AS1Q96HZ7 61 aa15.37■□□□□ 0.05
CCDC88B-207ENST00000479965 C8orf88P0DMB2 117 aa15.37■□□□□ 0.05
CCDC88B-207ENST00000479965 UQCRFS1P47985 274 aa15.37■□□□□ 0.05
CCDC88B-207ENST00000479965 FABP6P51161 128 aa15.37■□□□□ 0.05
CCDC88B-207ENST00000479965 C15orf65H3BRN8 121 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 KLF14Q8TD94 323 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 GRAMD2BQ96HH9 432 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 TMEM191AQ9H0A3 160 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 IGHV1-24A0A0C4DH33 117 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 TMEM238C9JI98 176 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 PPIAL4DF5H284 164 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 LYZL6O75951 148 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 CSN3P07498 182 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 GNG5P63218 68 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 LINC00696Q6ZRV3 163 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 OR4S2Q8NH73 311 aa15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 NAA38Q9BRA0 125 aaKnown RBP15.36■□□□□ 0.05
CCDC88B-207ENST00000479965 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 A0A1W2PRE2 83 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 VWC2LB2RUY7 222 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 PLAUP00749 431 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 TCTAP57738 103 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 KLF5Q13887 457 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 C1orf229Q6ZS94 237 aaPredicted RBP15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 WFDC8Q8IUA0 241 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 C11orf53Q8IXP5 236 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 SAP25Q8TEE9 199 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 OR51B2Q9Y5P1 312 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 DSPP15924 2871 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 TRGV8A0A0C4DH27 118 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 FAM90A9PA6NNJ1 464 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 J3QR06 171 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 IGHV3-48P01763 117 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 WDR82Q6UXN9 313 aa15.35■□□□□ 0.05
CCDC88B-207ENST00000479965 C21orf140B9A014 251 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 SPEM1Q8N4L4 309 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 WIPF2Q8TF74 440 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 FAM173AQ9BQD7 235 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 SLC25A33Q9BSK2 321 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 FNDC4Q9H6D8 234 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 GAGE10A6NGK3 116 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 TIMM8AO60220 97 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 SMIM21Q3B7S5 101 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 CD177Q8N6Q3 437 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 CFIP05156 583 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 TMEM11P17152 192 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 SPOCK3Q9BQ16 436 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 CHRDL1Q9BU40 450 aa15.34■□□□□ 0.05
CCDC88B-207ENST00000479965 C7orf71A4D174 169 aa15.33■□□□□ 0.05
CCDC88B-207ENST00000479965 PGLYRP4Q96LB8 373 aa15.33■□□□□ 0.05
CCDC88B-207ENST00000479965 TTTY12Q9BZ98 90 aa15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms