RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NXF2Q9GZY0 626 aaKnown RBP9.03□□□□□ -0.96
MSH5-SAPCD1-205ENST00000476085 AGRNO00468 2067 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 OR4C46A6NHA9 309 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 INS-IGF2F8WCM5 200 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 H3BMQ9 156 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 ZNF207O43670 478 aaKnown RBP9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 RCVRNP35243 200 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 HSPE1P61604 102 aaKnown RBP9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 PRCDQ00LT1 54 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 PHLDA2Q53GA4 152 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 CEMP1Q6PRD7 247 aaPredicted RBP9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 TBC1D26Q86UD7 250 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 SNX29P2Q8IUI4 249 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 STPG3Q8N7X2 389 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 C20orf24Q9BUV8 137 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 RHPN1-AS1Q9BWJ2 59 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 EXTL2Q9UBQ6 330 aa9.02□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 NUPR2A6NF83 97 aa9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 ZNF701M0R085 212 aaPredicted RBP9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 MFAP4P55083 255 aa9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 MRPS10P82664 201 aaKnown RBP9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 RELQ04864 619 aaPredicted RBP9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 Q56UQ5 140 aa9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 LHFPL1Q86WI0 220 aa9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 LILRB2Q8N423 598 aa9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 UBAC2Q8NBM4 344 aa9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 TMEM116Q8NCL8 245 aa9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 VSIRQ9H7M9 311 aa9.01□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 A0A0B4J293 547 aa9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 NUPL2O15504 423 aaKnown RBP9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 MT-CO2P00403 227 aa9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 CMC4P56277 68 aaPredicted RBP9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 RND3P61587 244 aa9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 TSPAN5P62079 268 aa9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 ZNF124Q15973 351 aa9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 H2BFWTQ7Z2G1 175 aa9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 APRG1Q8IVJ8 170 aa9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 C6orf62Q9GZU0 229 aaPredicted RBP9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 RSL24D1Q9UHA3 163 aaKnown RBP9□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 TRAV14DV4A0A0A6YYC5 116 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 CXorf65A6NEN9 183 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 GABARAPH6UMI1 98 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 CTDSP2O14595 271 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 IGKV1-5P01602 117 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 IGHV3-48P01763 117 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 RPL35AP18077 110 aaKnown RBP8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 TBPP20226 339 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 S100GP29377 79 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 SSBP1Q04837 148 aaKnown RBP8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 PMS2P11Q13670 270 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 TOMM20LQ6UXN7 152 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 OR4A16Q8NH70 328 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 MRGPRFQ96AM1 343 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 MISP3Q96FF7 219 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 ZNF486Q96H40 463 aaPredicted RBP8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 DIRAS2Q96HU8 199 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 SLIRPQ9GZT3 109 aaKnown RBP8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 CSTL1Q9H114 145 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 ZFAND3Q9H8U3 227 aa8.99□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 TMEM50AO95807 157 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 LY6G6CO95867 125 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 APOHP02749 345 aaPredicted RBP8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 CD5P06127 495 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 ERHP84090 104 aaKnown RBP8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 IZUMO4Q1ZYL8 232 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 MCFD2Q8NI22 146 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 GATAD1Q8WUU5 269 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 MIXL1Q9H2W2 232 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 NDUFA13Q9P0J0 144 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 KLK11Q9UBX7 282 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 MTFP1Q9UDX5 166 aa8.98□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 IGHV3-49A0A0A0MS15 119 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 TRAV2A0A0B4J234 112 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 M0QYG6 137 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 CTDSPLO15194 276 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 S100A5P33763 92 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 IL18Q14116 193 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 BSXQ3C1V8 233 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 AARDQ4LEZ3 155 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 RNASE10Q5GAN6 216 aaKnown RBP8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 ARRDC1Q8N5I2 433 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 OR52I2Q8NH67 350 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 ST8SIA2Q92186 375 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 TP53RKQ96S44 253 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 ABHD1Q96SE0 405 aa8.97□□□□□ -0.97
MSH5-SAPCD1-205ENST00000476085 IGHV3OR16-13A0A075B7E8 117 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 IGHV3-74A0A0B4J1X5 117 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 A0A1B0GU03 582 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 FABP12A6NFH5 140 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 MPTX1A8MV57 137 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 ST8SIA3O43173 380 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 GNG7O60262 68 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 YIF1AO95070 293 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 GIG44P09565 113 aaPredicted RBP8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 RNASE2P10153 161 aaKnown RBP8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 TAS2R19P59542 299 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 TCF24Q7RTU0 167 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 TMEM217Q8N7C4 229 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 TMEM229BQ8NBD8 167 aa8.96□□□□□ -0.98
MSH5-SAPCD1-205ENST00000476085 PHLDA1Q8WV24 401 aaPredicted RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms