RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 RAB40CQ96S21 281 aa3.21□□□□□ -1.9
USP4-209ENST00000475873 C7orf50Q9BRJ6 194 aaKnown RBP3.21□□□□□ -1.9
USP4-209ENST00000475873 METTL9Q9H1A3 318 aa3.21□□□□□ -1.9
USP4-209ENST00000475873 BANF2Q9H503 90 aa3.21□□□□□ -1.9
USP4-209ENST00000475873 VSIRQ9H7M9 311 aa3.21□□□□□ -1.9
USP4-209ENST00000475873 GPN1Q9HCN4 374 aaPredicted RBP3.21□□□□□ -1.9
USP4-209ENST00000475873 NAGKQ9UJ70 344 aa3.21□□□□□ -1.9
USP4-209ENST00000475873 LOC102723971A0A1B0GUV8 181 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 SMIM9A6NGZ8 99 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 CBY3A6NI87 242 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 H3BMM0 161 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 RS1O15537 224 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 ACTL6BO94805 426 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 NAPSAO96009 420 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 SMIM6P0DI80 62 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 GTF2F2P13984 249 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 DTYMKP23919 212 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 CEACAM6P40199 344 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 RPL27AP46776 148 aaKnown RBP3.2□□□□□ -1.9
USP4-209ENST00000475873 HOXA1P49639 335 aaPredicted RBP3.2□□□□□ -1.9
USP4-209ENST00000475873 PLA2G7Q13093 441 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 LINC01620Q4KN68 170 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 SPANXN2Q5MJ10 180 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 PXDC1Q5TGL8 231 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 GDF5OSQ5U4N7 250 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 HACD4Q5VWC8 232 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 CST9LP1Q5W188 147 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 SPSB3Q6PJ21 355 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 DHFR2Q86XF0 187 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 GID4Q8IVV7 300 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 MMD2Q8IY49 270 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 ZNF709Q8N972 641 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 OR10H4Q8NGA5 316 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 OR5D14Q8NGL3 314 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 MAFIPQ8WZ33 124 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 DGCR14Q96DF8 476 aaKnown RBP3.2□□□□□ -1.9
USP4-209ENST00000475873 GRAMD2BQ96HH9 432 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 Q96M66 194 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 HDHD3Q9BSH5 251 aaPredicted RBP3.2□□□□□ -1.9
USP4-209ENST00000475873 HINT2Q9BX68 163 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 S100A14Q9HCY8 104 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 RABAC1Q9UI14 185 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 ARL2BPQ9Y2Y0 163 aa3.2□□□□□ -1.9
USP4-209ENST00000475873 A0A1B0GW15 77 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 TCRBV5S2A0A599 114 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 TMEM238C9JI98 176 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 SMLR1H3BR10 107 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 TEX46H3BTG2 121 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 K7EIM0 57 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 DNASE2O00115 360 aaPredicted RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 ST8SIA3O43173 380 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 PDCD6O75340 191 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 MED6O75586 246 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 CTXN2P0C2S0 81 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 OR2T7P0C7T2 308 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 DEFB130BP0DP73 79 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 DEFB130AP0DP74 79 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 HIST1H1BP16401 226 aaKnown RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 RAB3AP20336 220 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 PRKACGP22612 351 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 GNRHRP30968 328 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 FGF9P31371 208 aaPredicted RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 DUTP33316 252 aaKnown RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 ZNF93P35789 620 aaPredicted RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 BRWD1-AS2P59051 145 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 PSME3P61289 254 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 PAFAH1B2P68402 229 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 CNPY1Q3B7I2 92 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 LBHQ53QV2 105 aaPredicted RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 DDI2Q5TDH0 399 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 GPR107Q5VW38 600 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 NXNL2Q5VZ03 156 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 OR2T5Q6IEZ7 315 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 Q6ZNX1 250 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 C6orf201Q7Z4U5 140 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 PUSL1Q8N0Z8 303 aaKnown RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 ZFP82Q8N141 532 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 OR4D10Q8NGI6 311 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 OR6M1Q8NGM8 313 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 OR2T29Q8NH02 315 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 CIRBP-AS1Q8TBR5 109 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 VN1R17PQ8TDU5 208 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 GIPC3Q8TF64 312 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 NTN5Q8WTR8 489 aaPredicted RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 FCGR1BQ92637 280 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 MRGPRFQ96AM1 343 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 HOPXQ9BPY8 73 aaPredicted RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 PDCD1LG2Q9BQ51 273 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 ALKBH7Q9BT30 221 aaPredicted RBP3.19□□□□□ -1.9
USP4-209ENST00000475873 FAAP24Q9BTP7 215 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 MAGT1Q9H0U3 335 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 OR2D2Q9H210 308 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 RDH8Q9NYR8 311 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 ABRACLQ9P1F3 81 aa3.19□□□□□ -1.9
USP4-209ENST00000475873 TRAV26-1A0A087WT03 109 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 TRAV14DV4A0A0A6YYC5 116 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 A0A1B0GV90 55 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 RAB27BO00194 218 aa3.18□□□□□ -1.9
USP4-209ENST00000475873 TCAPO15273 167 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms