RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 RUNX1Q01196 453 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 STX5Q13190 355 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 RGS21Q2M5E4 152 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 UNQ6190/PRO20217Q6UXQ8 127 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 AAED1Q7RTV5 226 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 RPS19BP1Q86WX3 136 aaKnown RBP0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 BPIFA4PQ86YQ2 179 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 CLVS1Q8IUQ0 354 aaPredicted RBP0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 Q8N2B8 174 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 C15orf53Q8NAA6 179 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 TERB2Q8NHR7 220 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 H1FXQ92522 213 aaKnown RBP0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 TMEM106AQ96A25 262 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 TOMM6Q96B49 74 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 PPP1R14BQ96C90 147 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 RETNLBQ9BQ08 111 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 TMEM147Q9BVK8 224 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 ULBP3Q9BZM4 244 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 YIPF3Q9GZM5 350 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 ROBO3Q96MS0 1386 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 A0A087WUJ7 227 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 IGKV3D-7A0A0C4DH55 119 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 IGKV3OR2-268A0A0C4DH90 116 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 SMIM9A6NGZ8 99 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 TMEM212A6NML5 194 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 GOLGA6L19H0YKK7 550 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 BUB1B-PAK6H3BSN5 160 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 ZFYVE9O95405 1425 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 CNIH1O95406 144 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 CRYZL1O95825 349 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 TTRP02766 147 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 ANGP03950 147 aaKnown RBP0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 CRYGAP11844 174 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 G6PCP35575 357 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 CDC42P60953 191 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 ZNF846Q147U1 533 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 CDK5R1Q15078 307 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 LCN15Q6UWW0 184 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 WFDC11Q8NEX6 87 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 C10orf105Q8TEF2 133 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 DNAJC9Q8WXX5 260 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 GINS4Q9BRT9 223 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 UCK1Q9HA47 277 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 CKLFQ9UBR5 152 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 PCDH15Q96QU1 1955 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 ECM29Q5VYK3 1845 aa0.85□□□□□ -2.27
CCDC88A-212ENST00000474059 COL4A5P29400 1685 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 IGKV1D-42A0A075B6H8 117 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 TRAV9-1A0A075B6T8 112 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 PIRO00625 290 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 IFNA10P01566 189 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 CTSDP07339 412 aaPredicted RBP0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 HTR1AP08908 422 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 FKBP2P26885 142 aaKnown RBP0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 SURF2Q15527 256 aaPredicted RBP0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 C10orf55Q5SWW7 151 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 Q6ZQT0 140 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 ZNF826PQ6ZT77 177 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 MIR17HGQ75NE6 70 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 ZNF565Q8N9K5 539 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 REG4Q9BYZ8 158 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 DCSTAMPQ9H295 470 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 OR51V1Q9H2C8 321 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 MED9Q9NWA0 146 aa0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 SOX21Q9Y651 276 aaPredicted RBP0.84□□□□□ -2.27
CCDC88A-212ENST00000474059 NEO1Q92859 1461 aa0.84□□□□□ -2.28
CCDC88A-212ENST00000474059 PIK3C2GO75747 1445 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 RIC1Q4ADV7 1423 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 IGKV2-40A0A087WW87 121 aaPredicted RBP0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 TMEM114B3SHH9 223 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 E2F6O75461 281 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 OR5F1O95221 314 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 IGKV2D-40P01614 121 aaPredicted RBP0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 SMIM10L2AP0DMW4 78 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 SMIM10L2BP0DMW5 78 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 RNASE3P12724 160 aaKnown RBP0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 SPI1P17947 270 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 SRSF6Q13247 344 aaKnown RBP0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 EDDM3AQ14507 147 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 KHDC3LQ587J8 217 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 DEFB128Q7Z7B8 93 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 OR52R1Q8NGF1 315 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 BORCS7Q96B45 105 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 CMSS1Q9BQ75 279 aaKnown RBP0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 C20orf27Q9GZN8 174 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 SLC39A9Q9NUM3 307 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 ERGIC3Q9Y282 383 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 PRELID3BQ9Y3B1 194 aa0.83□□□□□ -2.28
CCDC88A-212ENST00000474059 HEATR5BQ9P2D3 2071 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 CCDC144AA2RUR9 1427 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 NCOA1Q15788 1441 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 ZNF106Q9H2Y7 1883 aaKnown RBP0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 IGKV3-7A0A075B6H7 116 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 hADV38S2A0JD32 116 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 HCRTO43612 131 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 OR2J2O76002 312 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 RBP1P09455 135 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 KRTAP10-4P60372 401 aaPredicted RBP0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 CDK10Q15131 360 aa0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms