RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 MRPL27Q9P0M9 148 aaKnown RBP13.48□□□□□ -0.25
UPF3A-203ENST00000474056 IGHV3OR16-8A0A075B7F1 116 aa13.47□□□□□ -0.25
UPF3A-203ENST00000474056 TEX13DA0A0J9YY54 714 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-203ENST00000474056 CCDC160A6NGH7 325 aa13.47□□□□□ -0.25
UPF3A-203ENST00000474056 NDUFA4O00483 81 aa13.47□□□□□ -0.25
UPF3A-203ENST00000474056 B3GALNT1O75752 331 aa13.47□□□□□ -0.25
UPF3A-203ENST00000474056 SCAF4O95104 1147 aaKnown RBP13.47□□□□□ -0.25
UPF3A-203ENST00000474056 MT-CO2P00403 227 aa13.47□□□□□ -0.25
UPF3A-203ENST00000474056 ERHP84090 104 aaKnown RBP13.47□□□□□ -0.25
UPF3A-203ENST00000474056 MARC2Q969Z3 335 aa13.47□□□□□ -0.25
UPF3A-203ENST00000474056 PINX1Q96BK5 328 aaKnown RBP13.47□□□□□ -0.25
UPF3A-203ENST00000474056 RRNAD1Q96FB5 475 aaKnown RBP13.47□□□□□ -0.25
UPF3A-203ENST00000474056 PRRT1Q99946 306 aa13.47□□□□□ -0.25
UPF3A-203ENST00000474056 CRYM-AS1A6NIL9 109 aa13.46□□□□□ -0.25
UPF3A-203ENST00000474056 CDS2O95674 445 aa13.46□□□□□ -0.25
UPF3A-203ENST00000474056 IFNA17P01571 189 aa13.46□□□□□ -0.25
UPF3A-203ENST00000474056 IGHV3-48P01763 117 aa13.46□□□□□ -0.25
UPF3A-203ENST00000474056 CTSGP08311 255 aa13.46□□□□□ -0.25
UPF3A-203ENST00000474056 Q6ZRM9 215 aa13.46□□□□□ -0.25
UPF3A-203ENST00000474056 RNASE11Q8TAA1 199 aaKnown RBP13.46□□□□□ -0.25
UPF3A-203ENST00000474056 RBM38Q9H0Z9 239 aaKnown RBP13.46□□□□□ -0.25
UPF3A-203ENST00000474056 SRD5A3Q9H8P0 318 aa13.46□□□□□ -0.25
UPF3A-203ENST00000474056 OR11H12B2RN74 326 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 INS-IGF2F8WCM5 200 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 ZNF207O43670 478 aaKnown RBP13.45□□□□□ -0.26
UPF3A-203ENST00000474056 FCGR2BP31994 310 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-203ENST00000474056 ETV6P41212 452 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 MFAP4P55083 255 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 LINC00322Q6ZN03 302 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-203ENST00000474056 SELENOHQ8IZQ5 122 aaKnown RBP13.45□□□□□ -0.26
UPF3A-203ENST00000474056 RBPMSQ93062 196 aaKnown RBP13.45□□□□□ -0.26
UPF3A-203ENST00000474056 TMEM230Q96A57 120 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 SPATA25Q9BR10 227 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 PDCD10Q9BUL8 212 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 C20orf24Q9BUV8 137 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 DAZ1Q9NQZ3 744 aaKnown RBP13.45□□□□□ -0.26
UPF3A-203ENST00000474056 SCP2D1Q9UJQ7 156 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 RYR3Q15413 4870 aa13.45□□□□□ -0.26
UPF3A-203ENST00000474056 HOXA1P49639 335 aaPredicted RBP13.44□□□□□ -0.26
UPF3A-203ENST00000474056 DHODHQ02127 395 aa13.44□□□□□ -0.26
UPF3A-203ENST00000474056 FAM219AQ8IW50 185 aa13.44□□□□□ -0.26
UPF3A-203ENST00000474056 MCUBQ9NWR8 336 aa13.44□□□□□ -0.26
UPF3A-203ENST00000474056 GAR1Q9NY12 217 aaKnown RBP13.44□□□□□ -0.26
UPF3A-203ENST00000474056 V9GYH0 126 aa13.44□□□□□ -0.26
UPF3A-203ENST00000474056 STARD9Q9P2P6 4700 aa13.43□□□□□ -0.26
UPF3A-203ENST00000474056 TRAV25A0A0B4J276 109 aa13.43□□□□□ -0.26
UPF3A-203ENST00000474056 RBMY1BA6NDE4 496 aaKnown RBP13.43□□□□□ -0.26
UPF3A-203ENST00000474056 RBMY1EA6NEQ0 496 aaKnown RBP13.43□□□□□ -0.26
UPF3A-203ENST00000474056 NUPL2O15504 423 aaKnown RBP13.43□□□□□ -0.26
UPF3A-203ENST00000474056 RBMY1DP0C7P1 496 aaKnown RBP13.43□□□□□ -0.26
UPF3A-203ENST00000474056 RNASE2P10153 161 aaKnown RBP13.43□□□□□ -0.26
UPF3A-203ENST00000474056 SNCAP37840 140 aa13.43□□□□□ -0.26
UPF3A-203ENST00000474056 TMEM268Q5VZI3 342 aa13.43□□□□□ -0.26
UPF3A-203ENST00000474056 RBPMS2Q6ZRY4 209 aaKnown RBP13.43□□□□□ -0.26
UPF3A-203ENST00000474056 SLC16A13Q7RTY0 426 aa13.43□□□□□ -0.26
UPF3A-203ENST00000474056 OR52B4Q8NGK2 314 aa13.43□□□□□ -0.26
UPF3A-203ENST00000474056 TRIM63Q969Q1 353 aa13.43□□□□□ -0.26
UPF3A-203ENST00000474056 TXN2Q99757 166 aa13.43□□□□□ -0.26
UPF3A-203ENST00000474056 PRR13Q9NZ81 148 aa13.43□□□□□ -0.26
UPF3A-203ENST00000474056 GNG7O60262 68 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 RELQ04864 619 aaPredicted RBP13.42□□□□□ -0.26
UPF3A-203ENST00000474056 TMEM187Q14656 261 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 ZNF79Q15937 498 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 AARDQ4LEZ3 155 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 PYDC2Q56P42 97 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 PVRIGQ6DKI7 326 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 GPR146Q96CH1 333 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 RETNQ9HD89 108 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 ENY2Q9NPA8 101 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 CACNG5Q9UF02 275 aa13.42□□□□□ -0.26
UPF3A-203ENST00000474056 C15orf62A8K5M9 175 aa13.41□□□□□ -0.26
UPF3A-203ENST00000474056 C3orf84H3BNL1 204 aa13.41□□□□□ -0.26
UPF3A-203ENST00000474056 K7EMT4 169 aa13.41□□□□□ -0.26
UPF3A-203ENST00000474056 KLF9Q13886 244 aaPredicted RBP13.41□□□□□ -0.26
UPF3A-203ENST00000474056 MUC7Q8TAX7 377 aa13.41□□□□□ -0.26
UPF3A-203ENST00000474056 GALNT14Q96FL9 552 aa13.41□□□□□ -0.26
UPF3A-203ENST00000474056 CITED4Q96RK1 184 aa13.41□□□□□ -0.26
UPF3A-203ENST00000474056 TMEM56-RWDD3S4R434 201 aa13.41□□□□□ -0.26
UPF3A-203ENST00000474056 TSPAN4O14817 238 aa13.4□□□□□ -0.26
UPF3A-203ENST00000474056 YIF1AO95070 293 aa13.4□□□□□ -0.26
UPF3A-203ENST00000474056 S100A5P33763 92 aa13.4□□□□□ -0.26
UPF3A-203ENST00000474056 SUB1P53999 127 aaKnown RBP eCLIP13.4□□□□□ -0.26
UPF3A-203ENST00000474056 SPCS3P61009 180 aa13.4□□□□□ -0.26
UPF3A-203ENST00000474056 SUPT4H1P63272 117 aaKnown RBP13.4□□□□□ -0.26
UPF3A-203ENST00000474056 BSXQ3C1V8 233 aa13.4□□□□□ -0.26
UPF3A-203ENST00000474056 OR52E5Q8NH55 327 aa13.4□□□□□ -0.26
UPF3A-203ENST00000474056 OR10C1Q96KK4 312 aa13.4□□□□□ -0.26
UPF3A-203ENST00000474056 SCGB3A2Q96PL1 93 aa13.4□□□□□ -0.26
UPF3A-203ENST00000474056 HIPK2Q9H2X6 1198 aa13.4□□□□□ -0.26
UPF3A-203ENST00000474056 FNDC4Q9H6D8 234 aaPredicted RBP13.4□□□□□ -0.26
UPF3A-203ENST00000474056 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.4□□□□□ -0.26
UPF3A-203ENST00000474056 CORTO00230 105 aa13.39□□□□□ -0.27
UPF3A-203ENST00000474056 AKR1C4P17516 323 aa13.39□□□□□ -0.27
UPF3A-203ENST00000474056 NPBWR1P48145 328 aa13.39□□□□□ -0.27
UPF3A-203ENST00000474056 ANKRD55Q3KP44 614 aa13.39□□□□□ -0.27
UPF3A-203ENST00000474056 CCDC190Q86UF4 302 aa13.39□□□□□ -0.27
UPF3A-203ENST00000474056 TOMM5Q8N4H5 51 aa13.39□□□□□ -0.27
UPF3A-203ENST00000474056 DUSP18Q8NEJ0 188 aa13.39□□□□□ -0.27
UPF3A-203ENST00000474056 SPAG8Q99932 426 aaPredicted RBP13.39□□□□□ -0.27
UPF3A-203ENST00000474056 EDA2RQ9HAV5 297 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 138.9 ms