RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SP6Q3SY56 376 aa11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 LAMTOR1Q6IAA8 161 aa11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 SLC35G3Q8N808 338 aa11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 ZNF114Q8NC26 417 aa11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 TERB2Q8NHR7 220 aa11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 MARCH1Q8TCQ1 289 aa11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 SPAG8Q99932 426 aaPredicted RBP11.73□□□□□ -0.53
CCDC88B-205ENST00000472524 LOC102724200A0A096LPH7 203 aaPredicted RBP11.72□□□□□ -0.53
CCDC88B-205ENST00000472524 TSPAN4O14817 238 aa11.72□□□□□ -0.53
CCDC88B-205ENST00000472524 ST8SIA3O43173 380 aa11.72□□□□□ -0.53
CCDC88B-205ENST00000472524 ATG12O94817 140 aa11.72□□□□□ -0.53
CCDC88B-205ENST00000472524 YIF1AO95070 293 aa11.72□□□□□ -0.53
CCDC88B-205ENST00000472524 IFNA17P01571 189 aa11.72□□□□□ -0.53
CCDC88B-205ENST00000472524 RELQ04864 619 aaPredicted RBP11.72□□□□□ -0.53
CCDC88B-205ENST00000472524 RNASE11Q8TAA1 199 aaKnown RBP11.72□□□□□ -0.53
CCDC88B-205ENST00000472524 PDCD10Q9BUL8 212 aa11.72□□□□□ -0.53
CCDC88B-205ENST00000472524 HYDINQ4G0P3 5121 aa11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 IGHV3-49A0A0A0MS15 119 aa11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 A0A0B4J293 547 aa11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 C15orf62A8K5M9 175 aa11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 K7EMT4 169 aa11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 GNG7O60262 68 aa11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 CTSDP07339 412 aaPredicted RBP11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 P0C879 139 aa11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 HOXA1P49639 335 aaPredicted RBP11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 MRPS10P82664 201 aaKnown RBP11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 IL18Q14116 193 aa11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 ZNF414Q96IQ9 312 aa11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 C14orf166Q9Y224 244 aaKnown RBP11.71□□□□□ -0.53
CCDC88B-205ENST00000472524 A0A0G2JRQ6 117 aa11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 UCP1P25874 307 aa11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 FCGR2BP31994 310 aaPredicted RBP11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 SNCAP37840 140 aa11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 SSBP1Q04837 148 aaKnown RBP11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 MEF2DQ14814 521 aa11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 RAB2BQ8WUD1 216 aa11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 SMIM4Q8WVI0 70 aa11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 RRNAD1Q96FB5 475 aaKnown RBP11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 DIRAS2Q96HU8 199 aa11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 TXN2Q99757 166 aa11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 NXF2Q9GZY0 626 aaKnown RBP11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 CCDC59Q9P031 241 aaKnown RBP11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 SMPXQ9UHP9 88 aa11.7□□□□□ -0.54
CCDC88B-205ENST00000472524 IGHV7-4-1A0A0J9YVY3 117 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 OR4C46A6NHA9 309 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 DISC1C4P0D8 188 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 JTBO76095 146 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 OR5AC1P0C628 307 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 AKAIN1P0CW23 69 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 ETV6P41212 452 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 ODF3L2Q3SX64 289 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 TMEM116Q8NCL8 245 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 OR4C16Q8NGL9 310 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 DYNC2LI1Q8TCX1 351 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 RNF2Q99496 336 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 RHPN1-AS1Q9BWJ2 59 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 C6orf62Q9GZU0 229 aaPredicted RBP11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 ENY2Q9NPA8 101 aa11.69□□□□□ -0.54
CCDC88B-205ENST00000472524 IGKV3-7A0A075B6H7 116 aa11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 IGHV3OR16-13A0A075B7E8 117 aa11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 IGHV3-74A0A0B4J1X5 117 aa11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 TEX13DA0A0J9YY54 714 aaPredicted RBP11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 CHEK1O14757 476 aa11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 NOL3O60936 208 aaKnown RBP11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 DUSP18Q8NEJ0 188 aa11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 OR10C1Q96KK4 312 aa11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 OVOL2Q9BRP0 275 aa11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 RTBDNQ9BSG5 229 aaPredicted RBP11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 NAA60Q9H7X0 242 aa11.68□□□□□ -0.54
CCDC88B-205ENST00000472524 PLECQ15149 4684 aaKnown RBP11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 CTDSPLO15194 276 aa11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 B3GALNT1O75752 331 aa11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 RNASE2P10153 161 aaKnown RBP11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 NPBWR1P48145 328 aa11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 TFPI2P48307 235 aa11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 SUB1P53999 127 aaKnown RBP eCLIP11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 APOC4P55056 127 aa11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 TMBIM6P55061 237 aa11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 IL17DQ8TAD2 202 aa11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 LHFPL5Q8TAF8 219 aa11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 TMEM222Q9H0R3 208 aa11.67□□□□□ -0.54
CCDC88B-205ENST00000472524 TRAV14DV4A0A0A6YYC5 116 aa11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 INS-IGF2F8WCM5 200 aa11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 RPL35AP18077 110 aaKnown RBP11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 OPRK1P41145 380 aa11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 TOMM20LQ6UXN7 152 aa11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 Q6ZRM9 215 aa11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 GLYATL2Q8WU03 294 aa11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 BCL7BQ9BQE9 202 aa11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 GINS3Q9BRX5 216 aa11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 ALMS1Q8TCU4 4167 aa11.66□□□□□ -0.54
CCDC88B-205ENST00000472524 AGRNO00468 2067 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 CRYM-AS1A6NIL9 109 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 CORTO00230 105 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 CDS2O95674 445 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 SURF2Q15527 256 aaPredicted RBP11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 DEFB135Q30KP9 77 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 ZNF600Q6ZNG1 722 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 APRG1Q8IVJ8 170 aa11.65□□□□□ -0.54
CCDC88B-205ENST00000472524 FAM219AQ8IW50 185 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms