RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CCL2P13500 99 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 ORMDL3Q8N138 153 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 SPTAN1Q13813 2472 aaKnown RBP5.85□□□□□ -1.47
SYNE1-216ENST00000461872 PPIAL4EA0A075B759 164 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 PPIAL4DF5H284 164 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 CDX4O14627 284 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-216ENST00000461872 GNG7O60262 68 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 PPIAL4FP0DN26 164 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 LTBRP36941 435 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 RELBQ01201 579 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 C5orf30Q96GV9 206 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 ALKBH7Q9BT30 221 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-216ENST00000461872 GNB4Q9HAV0 340 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 PPIAL4AQ9Y536 164 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 CACNA1BQ00975 2339 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 FAM181BA6NEQ2 426 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 TMEM14BQ9NUH8 114 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 OOSP1A8MZH6 123 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 NBEAP1P0C6P0 100 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 BATF2Q8N1L9 274 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 OR5AN1Q8NGI8 311 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 OCC1Q8TAD7 63 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 A0A1W2PPE3 182 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 A1L4Q6 167 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 IGHV3-13P01766 116 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 VASH2Q86V25 355 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 MED12LQ86YW9 2145 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 TIAF1O95411 115 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 PSG7Q13046 419 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 ARPC1AQ92747 370 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 CPAMD8Q8IZJ3 1885 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 TSPOP30536 169 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 ADMP35318 185 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 PCNX1Q96RV3 2341 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 TMEM189A5PLL7 270 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 C15orf62A8K5M9 175 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 SMIM17P0DL12 118 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 BMPERQ8N8U9 685 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 ZNF414Q96IQ9 312 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 OR8B2Q96RD0 313 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 LPAR2Q9HBW0 351 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 MSL2Q9HCI7 577 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 SCO2A0A1W2PP80 73 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 C16orf97H3BN30 126 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 IL18BPO95998 194 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 OR9G9P0C7N8 305 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 GFI1BQ5VTD9 330 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 RND1Q92730 232 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 YPEL4Q96NS1 127 aa5.85□□□□□ -1.47
SYNE1-216ENST00000461872 RPUSD1Q9UJJ7 312 aaKnown RBP5.85□□□□□ -1.47
SYNE1-216ENST00000461872 IGHV3-43A0A0B4J1X8 118 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 SHISA9B4DS77 424 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 CIDEAO60543 219 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 TMEM50AO95807 157 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 IGHV3-43DP0DP04 118 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 SPATA31B1PQ5VZV4 182 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 TMEM167AQ8TBQ9 72 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 ELOVL1Q9BW60 279 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 IGHV2OR16-5A0A0B4J2B6 119 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 HIGD1CA8MV81 97 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 IGKV3-15P01624 115 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 OR13A1Q8NGR1 328 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 MISP3Q96FF7 219 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 SH2D7A6NKC9 451 aaPredicted RBP5.84□□□□□ -1.47
SYNE1-216ENST00000461872 BMPR1BO00238 502 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 CD5LO43866 347 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 RPL24P83731 157 aaKnown RBP5.84□□□□□ -1.47
SYNE1-216ENST00000461872 SLC25A39Q9BZJ4 359 aaPredicted RBP5.84□□□□□ -1.47
SYNE1-216ENST00000461872 GRIFINA4D1Z8 144 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 F2Z2F3 143 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 KLF5Q13887 457 aaPredicted RBP5.84□□□□□ -1.47
SYNE1-216ENST00000461872 HCFC1P51610 2035 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 CEP192Q8TEP8 1941 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 ORM2P19652 201 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 INSIG2Q9Y5U4 225 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 SIVA1O15304 175 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 SPRY3O43610 288 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 GOSR1O95249 250 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 SSTR5P35346 364 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 RPL15P61313 204 aaKnown RBP5.84□□□□□ -1.47
SYNE1-216ENST00000461872 RNFT1Q5M7Z0 435 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 OR8B3Q8NGG8 313 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 MYOZ3Q8TDC0 251 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 GTF3C1Q12789 2109 aa5.84□□□□□ -1.47
SYNE1-216ENST00000461872 IGKV1-6A0A0C4DH72 117 aa5.84□□□□□ -1.48
SYNE1-216ENST00000461872 KIR2DL2P43627 348 aaPredicted RBP5.84□□□□□ -1.48
SYNE1-216ENST00000461872 ATP5G3P48201 142 aa5.84□□□□□ -1.48
SYNE1-216ENST00000461872 Q8TCH9 128 aa5.84□□□□□ -1.48
SYNE1-216ENST00000461872 MGST2Q99735 147 aa5.84□□□□□ -1.48
SYNE1-216ENST00000461872 EPDR1Q9UM22 224 aa5.84□□□□□ -1.48
SYNE1-216ENST00000461872 KIAA1549Q9HCM3 1950 aa5.84□□□□□ -1.48
SYNE1-216ENST00000461872 A0A1W2PRS3 328 aa5.84□□□□□ -1.48
SYNE1-216ENST00000461872 ZNF784Q8NCA9 323 aaPredicted RBP5.84□□□□□ -1.48
SYNE1-216ENST00000461872 RAMP3O60896 148 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 C1orf185Q5T7R7 199 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 PEAR1Q5VY43 1037 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-216ENST00000461872 RBP4P02753 201 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 LYZP61626 148 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 FOXF2Q12947 444 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 SMIM27A0A1W2PRY6 76 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms