RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PQLC2Q6ZP29 291 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 FAM122AQ96E09 287 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 ZNF430Q9H8G1 570 aaPredicted RBP12.19□□□□□ -0.46
LDLR-202ENST00000455727 LY96Q9Y6Y9 160 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 IGHV2-70P01814 119 aa12.18□□□□□ -0.46
LDLR-202ENST00000455727 MLANAQ16655 118 aa12.18□□□□□ -0.46
LDLR-202ENST00000455727 MUC15Q8N387 334 aa12.18□□□□□ -0.46
LDLR-202ENST00000455727 LINC01560Q8TB33 94 aa12.18□□□□□ -0.46
LDLR-202ENST00000455727 A0A1W2PPQ1 181 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 C9JCJ5 164 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 SOD3P08294 240 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 PPOXP50336 477 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 TAS2R45P59539 299 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 WT1-ASQ06250 92 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 C4orf17Q53FE4 359 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 ZNF114Q8NC26 417 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 SFRP2Q96HF1 295 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 KALRNO60229 2985 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 TRAV20A0A0B4J274 112 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 ACTL6BO94805 426 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 RBP4P02753 201 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 ZNF841Q6ZN19 808 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 ST6GALNAC3Q8NDV1 305 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 OR5T1Q8NG75 326 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 RNF2Q99496 336 aa12.17□□□□□ -0.46
LDLR-202ENST00000455727 COL25A1Q9BXS0 654 aaPredicted RBP12.17□□□□□ -0.46
LDLR-202ENST00000455727 MRPL32Q9BYC8 188 aaKnown RBP12.17□□□□□ -0.46
LDLR-202ENST00000455727 IGLV1-47P01700 117 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 C1QTNF9P0C862 333 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 PRRX1P54821 245 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 KLRB1Q12918 225 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 PSG5Q15238 335 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 TEX45Q8NA69 505 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 OCC1Q8TAD7 63 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 MDFIC2A0A1B0GVS7 189 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 CCL21O00585 134 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 COL8A2P25067 703 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 MRGPRG-AS1Q2M3A8 158 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 ZNF672Q499Z4 452 aaPredicted RBP12.16□□□□□ -0.46
LDLR-202ENST00000455727 COA6Q5JTJ3 125 aaKnown RBP12.16□□□□□ -0.46
LDLR-202ENST00000455727 GFI1BQ5VTD9 330 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 GPR61Q9BZJ8 451 aa12.16□□□□□ -0.46
LDLR-202ENST00000455727 IGHV2-26A0A0B4J1V2 119 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 PSMB11A5LHX3 300 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 PGPEP1LA6NFU8 196 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 FAM90A27PA6NNH2 459 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 SSX2Q16385 188 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 ACTL10Q5JWF8 245 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 LURAP1LQ8IV03 231 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 OR2T6Q8NHC8 308 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 ZNF503Q96F45 646 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 SLC25A33Q9BSK2 321 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 AURKAIP1Q9NWT8 199 aaPredicted RBP12.15□□□□□ -0.46
LDLR-202ENST00000455727 SIAH2O43255 324 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 SLC25A17O43808 307 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 C8orf88P0DMB2 117 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 GATA2P23769 480 aaPredicted RBP12.15□□□□□ -0.46
LDLR-202ENST00000455727 PYY3Q5JQD4 70 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 FAM209BQ5JX69 171 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 PVRIGQ6DKI7 326 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 TEX38Q6PEX7 206 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 MRPL41Q8IXM3 137 aaKnown RBP12.15□□□□□ -0.46
LDLR-202ENST00000455727 BEND2Q8NDZ0 799 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 C8orf46Q8TAG6 207 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 TMEM37Q8WXS4 190 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 ACY3Q96HD9 319 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 DMRT1Q9Y5R6 373 aa12.15□□□□□ -0.46
LDLR-202ENST00000455727 TMEM183AQ8IXX5 376 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 MMD2Q8IY49 270 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 THAP8Q8NA92 274 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 OR10G8Q8NGN5 311 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 RITA1Q96K30 269 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 FNDC4Q9H6D8 234 aaPredicted RBP12.14□□□□□ -0.47
LDLR-202ENST00000455727 DNAJC4Q9NNZ3 241 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 A0A1W2PPI3 338 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 A0A1W2PRE2 83 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 CRYGBP07316 175 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 CLEC12BQ2HXU8 276 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 C10orf55Q5SWW7 151 aa12.14□□□□□ -0.47
LDLR-202ENST00000455727 LYNX1G3V0Z9 82 aa12.13□□□□□ -0.47
LDLR-202ENST00000455727 ENSAO43768 121 aaKnown RBP12.13□□□□□ -0.47
LDLR-202ENST00000455727 OR7C2O60412 319 aa12.13□□□□□ -0.47
LDLR-202ENST00000455727 LYNX1P0DP58 116 aa12.13□□□□□ -0.47
LDLR-202ENST00000455727 GRNP28799 593 aaKnown RBP12.13□□□□□ -0.47
LDLR-202ENST00000455727 SELENOTP62341 195 aa12.13□□□□□ -0.47
LDLR-202ENST00000455727 OR10D4PQ8NGN7 298 aa12.13□□□□□ -0.47
LDLR-202ENST00000455727 SGMS2Q8NHU3 365 aa12.13□□□□□ -0.47
LDLR-202ENST00000455727 PFDN5Q99471 154 aa12.13□□□□□ -0.47
LDLR-202ENST00000455727 CLEC7AQ9BXN2 247 aa12.13□□□□□ -0.47
LDLR-202ENST00000455727 RAXQ9Y2V3 346 aa12.13□□□□□ -0.47
LDLR-202ENST00000455727 TRAV9-1A0A075B6T8 112 aa12.12□□□□□ -0.47
LDLR-202ENST00000455727 TCRBV4S1A1TA0A5B7 111 aa12.12□□□□□ -0.47
LDLR-202ENST00000455727 BUB1B-PAK6H3BSN5 160 aa12.12□□□□□ -0.47
LDLR-202ENST00000455727 PDLIM4P50479 330 aa12.12□□□□□ -0.47
LDLR-202ENST00000455727 PRSS8Q16651 343 aa12.12□□□□□ -0.47
LDLR-202ENST00000455727 EAF1Q96JC9 268 aaPredicted RBP12.12□□□□□ -0.47
LDLR-202ENST00000455727 TPSG1Q9NRR2 321 aa12.12□□□□□ -0.47
LDLR-202ENST00000455727 ZMAT5Q9UDW3 170 aaKnown RBP12.12□□□□□ -0.47
LDLR-202ENST00000455727 MALRD1Q5VYJ5 2156 aa12.12□□□□□ -0.47
LDLR-202ENST00000455727 PPIAL4CA0A0B4J2A2 164 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms