RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 AVPP01185 164 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 KLF17Q5JT82 389 aaPredicted RBP11.32□□□□□ -0.6
USP39-207ENST00000450066 SPSB3Q6PJ21 355 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 SLC16A13Q7RTY0 426 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 Q8N9W7 124 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 MAPK1IP1LQ8NDC0 245 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 Q96MF0 132 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 FAM210AQ96ND0 272 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 F11RQ9Y624 299 aaKnown RBP11.32□□□□□ -0.6
USP39-207ENST00000450066 UNC79Q9P2D8 2635 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 CORTO00230 105 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 TGFAP01135 160 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 HBE1P02100 147 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 APELAP0DMC3 54 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 RAB2AP61019 212 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 CX3CL1P78423 397 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 ZNF726P1Q15940 193 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 MLANAQ16655 118 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 RPP25LQ8N5L8 163 aaKnown RBP11.32□□□□□ -0.6
USP39-207ENST00000450066 MBD3L1Q8WWY6 194 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 RCC1LQ96I51 464 aaKnown RBP11.32□□□□□ -0.6
USP39-207ENST00000450066 FAM96BQ9Y3D0 163 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 IGHV4-31P0DP07 118 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 M6PRP20645 277 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 ZP3P21754 424 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 MFAP2P55001 183 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 TMEM249Q2WGJ8 235 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 ACOT6Q3I5F7 207 aaPredicted RBP11.31□□□□□ -0.6
USP39-207ENST00000450066 BPIFCQ8NFQ6 507 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 OR10G4Q8NGN3 311 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 OR10G9Q8NGN4 311 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 OR10G7Q8NGN6 311 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 SLC35E1Q96K37 410 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 FNDC4Q9H6D8 234 aaPredicted RBP11.31□□□□□ -0.6
USP39-207ENST00000450066 HLA-DRB1P01911 266 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 SRSF3P84103 164 aaKnown RBP11.31□□□□□ -0.6
USP39-207ENST00000450066 ETFRF1Q6IPR1 90 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 ABHD5Q8WTS1 349 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 ARPC1AQ92747 370 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 LINC00052Q96N35 136 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 RASL11BQ9BPW5 248 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 PXMP4Q9Y6I8 212 aa11.31□□□□□ -0.6
USP39-207ENST00000450066 CREBBPQ92793 2442 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 IGKV1OR2-108A0A075B7D4 117 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 A0A1B0GV50 99 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 CD5P06127 495 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 CTRB1P17538 263 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 RPL29P47914 159 aaKnown RBP11.3□□□□□ -0.6
USP39-207ENST00000450066 BPIFB3P59826 476 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 CCL20P78556 96 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 CTRB2Q6GPI1 263 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 OR2T6Q8NHC8 308 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 PIFOQ8TCI5 191 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 MISP3Q96FF7 219 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 PDZD2O15018 2839 aa11.3□□□□□ -0.6
USP39-207ENST00000450066 ZFHX3Q15911 3703 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 CRYGCP07315 174 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 FBP1P09467 338 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 MIC13Q5XKP0 118 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 C19orf35Q6ZS72 473 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 SSX7Q7RTT5 188 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 OR1L6Q8NGR2 347 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 NARS2Q96I59 477 aaKnown RBP11.29□□□□□ -0.6
USP39-207ENST00000450066 FAM103A1Q9BTL3 118 aaKnown RBP11.29□□□□□ -0.6
USP39-207ENST00000450066 PBDC1Q9BVG4 233 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 SLC45A2Q9UMX9 530 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 ITPR2Q14571 2701 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 IGHV7-81A0A0B4J1V7 117 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 CYB5BO43169 146 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 TSPAN9O75954 239 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 YIF1AO95070 293 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 B2MP61769 119 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 PRR20EP86478 221 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 PRR20CP86479 221 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 PRR20DP86480 221 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 PRR20BP86481 221 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 PRR20AP86496 221 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 GUK1Q16774 197 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 STPG3Q8N7X2 389 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 ACY3Q96HD9 319 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 RBM14Q96PK6 669 aaKnown RBP11.29□□□□□ -0.6
USP39-207ENST00000450066 SSX3Q99909 188 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 SCRT1Q9BWW7 348 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 ACTR3CQ9C0K3 210 aaPredicted RBP11.29□□□□□ -0.6
USP39-207ENST00000450066 WNT10AQ9GZT5 417 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 TREM1Q9NP99 234 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 SLC39A9Q9NUM3 307 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 DMRT1Q9Y5R6 373 aa11.29□□□□□ -0.6
USP39-207ENST00000450066 CTXND1A0A1B0GTU2 59 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 TMEM218A2RU14 115 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 MAP1LC3B2A6NCE7 125 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 NPIPB5A8MRT5 1133 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 SEC14L6B5MCN3 397 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 DEFA4P12838 97 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 NDPQ00604 133 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 LCN15Q6UWW0 184 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 MAP1LC3BQ9GZQ8 125 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 TMEM231Q9H6L2 316 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 CR1P17927 2039 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 PEA15Q15121 130 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms