RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ZNF565Q8N9K5 539 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 MDS2Q8NDY4 140 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 OR2G3Q8NGZ4 309 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 LHFPL5Q8TAF8 219 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 MRAPQ8TCY5 172 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 CD300LFQ8TDQ1 290 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 ISOC2Q96AB3 205 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 C16orf74Q96GX8 76 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 TSNAXQ99598 290 aaKnown RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 FOXC2Q99958 501 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 SUCNR1Q9BXA5 334 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 NKX6-2Q9C056 277 aaPredicted RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 DEFB127Q9H1M4 99 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 RNF122Q9H9V4 155 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 TAF9BQ9HBM6 251 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 SLC2A9Q9NRM0 540 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 ZNF629Q9UEG4 869 aaPredicted RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 ATPIF1Q9UII2 106 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 KLF13Q9Y2Y9 288 aaPredicted RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 KPTNQ9Y664 436 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 ABCA7Q8IZY2 2146 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 SPAG17Q6Q759 2223 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 EXPH5Q8NEV8 1989 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 TNRC6BQ9UPQ9 1833 aaKnown RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 CEP192Q8TEP8 1941 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 SPTBP11277 2137 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 BORCS7-ASMTA0A0B4J1R7 106 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 TRGV5A0A0B4J1U4 118 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 TRAV39A0A0B4J263 110 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 C3orf85A0A1B0GTC6 90 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 NKX2-6A6NCS4 301 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 SLC22A20A6NK97 555 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 ZFP92A6NM28 416 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 CD300LBA8K4G0 201 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 RNASEK-C17orf49H0YIS7 233 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 TRAPPC2LH3BP13 241 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 GPR31O00270 319 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 SYNGR1O43759 233 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 TNFSF13O75888 250 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 ATG12O94817 140 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 GLAP06280 429 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 MUC1P15941 1255 aaPredicted RBP2.95□□□□□ -1.94
VPS29-202ENST00000447578 ADCYAP1P18509 176 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 IL32P24001 234 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 GNRHRP30968 328 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 GPX4P36969 197 aaPredicted RBP2.95□□□□□ -1.94
VPS29-202ENST00000447578 CFHR2P36980 270 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 PMELP40967 661 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 LPAR6P43657 344 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 SULT1A2P50226 295 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 RIPPLY3P57055 190 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 TMEM33P57088 247 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 IGFBP7Q16270 282 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 GUCA2BQ16661 112 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 MPV17LQ2QL34 196 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 CASC10Q5T4H9 136 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 FBXW9Q5XUX1 488 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 OR2T2Q6IF00 324 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 C12orf54Q6X4T0 127 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 FBXW12Q6X9E4 464 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 IL34Q6ZMJ4 242 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 MDP1Q86V88 176 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 ZNF695Q8IW36 515 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 C11orf53Q8IXP5 236 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 SVBPQ8N300 66 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 SLC35G3Q8N808 338 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 OR5A2Q8NGI9 324 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 ZNF596Q8TC21 504 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 OR5P3Q8WZ94 311 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 GALNT14Q96FL9 552 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 ZNF488Q96MN9 340 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 IP6K3Q96PC2 410 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 TP53RKQ96S44 253 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 NRIP2Q9BQI9 281 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 RHOFQ9HBH0 211 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 WFDC1Q9HC57 220 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 TMEM9BQ9NQ34 198 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 CCL28Q9NRJ3 127 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 UQCC1Q9NVA1 299 aa2.95□□□□□ -1.94
VPS29-202ENST00000447578 GOLGA4Q13439 2230 aaKnown RBP2.95□□□□□ -1.94
VPS29-202ENST00000447578 KIR2DS1A0A191URI9 304 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 FAM24AA6NFZ4 105 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 ATP6V1G2-DDX39BF2Z307 99 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 TOR1AO14656 332 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 PHOX2AO14813 284 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 DEGS1O15121 323 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 SS18L1O75177 396 aaPredicted RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 NAPSAO96009 420 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 PRH1P02810 166 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 ARG1P05089 322 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 CTXN2P0C2S0 81 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 OR8U9P0C7N5 309 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 PVALBP20472 110 aaPredicted RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 IDH3GP51553 393 aaPredicted RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 CAV2P51636 162 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 UBE2NP61088 152 aaKnown RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 ERVS71-1P61550 626 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 POLR2GP62487 172 aaKnown RBP eCLIP2.94□□□□□ -1.94
VPS29-202ENST00000447578 GNG3P63215 75 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 HLA-DRB3P79483 266 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms