RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 K7EIL1 84 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 K7EIM0 57 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 ANXA7P20073 488 aaKnown RBP14.24□□□□□ -0.13
SHH-204ENST00000441114 ZNF846Q147U1 533 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 SMCO1Q147U7 214 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 Q56UQ5 140 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 NMSQ5H8A3 153 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 DEFB121Q5J5C9 76 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 PLET1Q6UQ28 207 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 ZNF114Q8NC26 417 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 OR52E5Q8NH55 327 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 OR1S1Q8NH92 325 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 HEYLQ9NQ87 328 aaPredicted RBP14.24□□□□□ -0.13
SHH-204ENST00000441114 PEMTQ9UBM1 199 aa14.24□□□□□ -0.13
SHH-204ENST00000441114 ZNF320A2RRD8 509 aa14.23□□□□□ -0.13
SHH-204ENST00000441114 C9orf170A2RU37 121 aa14.23□□□□□ -0.13
SHH-204ENST00000441114 MT-CO2P00403 227 aa14.23□□□□□ -0.13
SHH-204ENST00000441114 CSN3P07498 182 aa14.23□□□□□ -0.13
SHH-204ENST00000441114 HOXB5P09067 269 aa14.23□□□□□ -0.13
SHH-204ENST00000441114 RNASE2P10153 161 aaKnown RBP14.23□□□□□ -0.13
SHH-204ENST00000441114 SUB1P53999 127 aaKnown RBP eCLIP14.23□□□□□ -0.13
SHH-204ENST00000441114 WDR12Q9GZL7 423 aaKnown RBP14.23□□□□□ -0.13
SHH-204ENST00000441114 DUXBA0A1W2PPF3 345 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 INS-IGF2F8WCM5 200 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 I3L2K1 104 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 TGOLN2O43493 480 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 OR4E1P0C645 316 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 SPNP16150 400 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 UBE2MP61081 183 aaKnown RBP14.22□□□□□ -0.13
SHH-204ENST00000441114 FAM106AQ4KMX7 169 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 AARDQ4LEZ3 155 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 C4orf46Q504U0 113 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 C11orf87Q6NUJ2 197 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 IL34Q6ZMJ4 242 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 GPHB5Q86YW7 130 aa14.22□□□□□ -0.13
SHH-204ENST00000441114 ZNF256Q9Y2P7 627 aaPredicted RBP14.22□□□□□ -0.13
SHH-204ENST00000441114 TRAV6A0A075B6T7 132 aa14.21□□□□□ -0.13
SHH-204ENST00000441114 PIGBOS1A0A0B4J2F0 54 aa14.21□□□□□ -0.13
SHH-204ENST00000441114 EDN2P20800 178 aa14.21□□□□□ -0.13
SHH-204ENST00000441114 LRTM2Q8N967 370 aa14.21□□□□□ -0.13
SHH-204ENST00000441114 C20orf85Q9H1P6 137 aa14.21□□□□□ -0.13
SHH-204ENST00000441114 A0A1B0GU03 582 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 TCRBP04435 133 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 MFAP4P55083 255 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 TNFRSF9Q07011 255 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 DHRS2Q13268 280 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 LYG2Q86SG7 212 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 BSCL2Q96G97 398 aaPredicted RBP14.2□□□□□ -0.14
SHH-204ENST00000441114 CHRDL1Q9BU40 450 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 HIPK2Q9H2X6 1198 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 RBKSQ9H477 322 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 SELENOKQ9Y6D0 94 aa14.2□□□□□ -0.14
SHH-204ENST00000441114 F8W735 103 aaPredicted RBP14.19□□□□□ -0.14
SHH-204ENST00000441114 LGALS9O00182 355 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 IGLV1-51P01701 117 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 HTR2BP41595 481 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 GGNBP1Q5YKI7 109 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 MZT2BQ6NZ67 158 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 OR52B4Q8NGK2 314 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 COQ8AQ8NI60 647 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 CACFD1Q9UGQ2 172 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 TBC1D24Q9ULP9 559 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 TMED3Q9Y3Q3 217 aa14.19□□□□□ -0.14
SHH-204ENST00000441114 FAM240BA0A1B0GVZ2 78 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 C2orf70A6NJV1 201 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 ADAP1O75689 374 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 UPK1BO75841 260 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 OPRK1P41145 380 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 MLANAQ16655 118 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 SPSB3Q6PJ21 355 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 UNQ9165/PRO28630Q6UXU0 137 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 SLC24A4Q8NFF2 622 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 DYNLRB2Q8TF09 96 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 CACNG8Q8WXS5 425 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 HSPB7Q9UBY9 170 aa14.18□□□□□ -0.14
SHH-204ENST00000441114 CORTO00230 105 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 GNG7O60262 68 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 IFNA10P01566 189 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 FOLR2P14207 255 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 GP9P14770 177 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 ADMP35318 185 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 BSXQ3C1V8 233 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 TM4SF20Q53R12 229 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 ADAMTSL5Q6ZMM2 481 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 DUSP18Q8NEJ0 188 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 DTD1Q8TEA8 209 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 NUDT15Q9NV35 164 aa14.17□□□□□ -0.14
SHH-204ENST00000441114 GAR1Q9NY12 217 aaKnown RBP14.17□□□□□ -0.14
SHH-204ENST00000441114 IGHV3OR16-8A0A075B7F1 116 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 NUPL2O15504 423 aaKnown RBP14.16□□□□□ -0.14
SHH-204ENST00000441114 PITX3O75364 302 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 CTSGP08311 255 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 H2AFB2P0C5Z0 115 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 NPY1RP25929 384 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 ASAH1Q13510 395 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 C2orf83Q53S99 150 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 PVRIGQ6DKI7 326 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 ATP6V0BQ99437 205 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 TXN2Q99757 166 aa14.16□□□□□ -0.14
SHH-204ENST00000441114 C20orf24Q9BUV8 137 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms