RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 UNQ9165/PRO28630Q6UXU0 137 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 MARC2Q969Z3 335 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 TMEM230Q96A57 120 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 PINX1Q96BK5 328 aaKnown RBP11.5□□□□□ -0.57
LIMS3-201ENST00000437679 GALNT14Q96FL9 552 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 ZNF436Q9C0F3 470 aaPredicted RBP11.5□□□□□ -0.57
LIMS3-201ENST00000437679 TMEM56-RWDD3S4R434 201 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 I3L2K1 104 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 MT-CO2P00403 227 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 FRMD6-AS1P0C7T7 363 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 IGHV4-30-4P0DP06 118 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 ANXA3P12429 323 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 MFAP4P55083 255 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 ELLP55199 621 aaPredicted RBP11.49□□□□□ -0.57
LIMS3-201ENST00000437679 TMEM187Q14656 261 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 GUCA2BQ16661 112 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 TM4SF20Q53R12 229 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 ZNF57Q68EA5 555 aaPredicted RBP11.49□□□□□ -0.57
LIMS3-201ENST00000437679 Q6ZRM9 215 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 UXS1Q8NBZ7 420 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 CACNG8Q8WXS5 425 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 IL22RA2Q969J5 263 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 GPR146Q96CH1 333 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 TXN2Q99757 166 aa11.49□□□□□ -0.57
LIMS3-201ENST00000437679 F8W735 103 aaPredicted RBP11.48□□□□□ -0.57
LIMS3-201ENST00000437679 NDUFA4O00483 81 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 NUPL2O15504 423 aaKnown RBP11.48□□□□□ -0.57
LIMS3-201ENST00000437679 FCGR2BP31994 310 aaPredicted RBP11.48□□□□□ -0.57
LIMS3-201ENST00000437679 INPP1P49441 399 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 SPCS3P61009 180 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 TMED4Q7Z7H5 227 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 OR52E5Q8NH55 327 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 TMEM190Q8WZ59 177 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 CHRDL1Q9BU40 450 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 SRRQ9GZT4 340 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 MRPL27Q9P0M9 148 aaKnown RBP11.48□□□□□ -0.57
LIMS3-201ENST00000437679 CACNG5Q9UF02 275 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 U3KQK5 164 aa11.48□□□□□ -0.57
LIMS3-201ENST00000437679 PIGBOS1A0A0B4J2F0 54 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 CORTO00230 105 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 CD81P60033 236 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 SRPXP78539 464 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 RELQ04864 619 aaPredicted RBP11.47□□□□□ -0.57
LIMS3-201ENST00000437679 AARDQ4LEZ3 155 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 TRIQKQ629K1 86 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 SBSPONQ8IVN8 264 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 SLC25A21Q9BQT8 299 aaPredicted RBP11.47□□□□□ -0.57
LIMS3-201ENST00000437679 TUBA4BQ9H853 241 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 PRR13Q9NZ81 148 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 CACFD1Q9UGQ2 172 aa11.47□□□□□ -0.57
LIMS3-201ENST00000437679 ZNF785A8K8V0 405 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 A8MZ25 164 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 GNG7O60262 68 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 IGHV3-48P01763 117 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 CTSGP08311 255 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 C8orf88P0DMB2 117 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 SULT1A3P0DMM9 295 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 SULT1A4P0DMN0 295 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 RNASE2P10153 161 aaKnown RBP11.46□□□□□ -0.57
LIMS3-201ENST00000437679 ADMP35318 185 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 SUPT4H1P63272 117 aaKnown RBP11.46□□□□□ -0.57
LIMS3-201ENST00000437679 TMEM128Q5BJH2 165 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 BTNL8Q6UX41 500 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 LGI3Q8N145 548 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 DUSP18Q8NEJ0 188 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 WDR89Q96FK6 387 aaPredicted RBP11.46□□□□□ -0.57
LIMS3-201ENST00000437679 NEURL2Q9BR09 285 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 C20orf24Q9BUV8 137 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 HEYLQ9NQ87 328 aaPredicted RBP11.46□□□□□ -0.57
LIMS3-201ENST00000437679 DAZ1Q9NQZ3 744 aaKnown RBP11.46□□□□□ -0.57
LIMS3-201ENST00000437679 C19orf73Q9NVV2 129 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 MLXQ9UH92 298 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 SELENOKQ9Y6D0 94 aa11.46□□□□□ -0.57
LIMS3-201ENST00000437679 A0A0B4J2A0 478 aa11.45□□□□□ -0.58
LIMS3-201ENST00000437679 CEBPZOSA8MTT3 80 aa11.45□□□□□ -0.58
LIMS3-201ENST00000437679 HTR2BP41595 481 aa11.45□□□□□ -0.58
LIMS3-201ENST00000437679 NPBWR1P48145 328 aa11.45□□□□□ -0.58
LIMS3-201ENST00000437679 PVRIGQ6DKI7 326 aa11.45□□□□□ -0.58
LIMS3-201ENST00000437679 RBPMS2Q6ZRY4 209 aaKnown RBP11.45□□□□□ -0.58
LIMS3-201ENST00000437679 TMEM61Q8N0U2 210 aa11.45□□□□□ -0.58
LIMS3-201ENST00000437679 ZMAT4Q9H898 229 aa11.45□□□□□ -0.58
LIMS3-201ENST00000437679 SHPKQ9UHJ6 478 aa11.45□□□□□ -0.58
LIMS3-201ENST00000437679 TRAV25A0A0B4J276 109 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 C15orf62A8K5M9 175 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 K7EMT4 169 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 YIF1AO95070 293 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 OPRK1P41145 380 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 CCR6P51684 374 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 RBMS2Q15434 407 aaKnown RBP11.44□□□□□ -0.58
LIMS3-201ENST00000437679 BAK1Q16611 211 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 ANKRD55Q3KP44 614 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 SLC16A13Q7RTY0 426 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 LYZL2Q7Z4W2 148 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 WWC2-AS2Q96NR7 200 aa11.44□□□□□ -0.58
LIMS3-201ENST00000437679 IGHV3OR16-8A0A075B7F1 116 aa11.43□□□□□ -0.58
LIMS3-201ENST00000437679 NAP1L6A6NFF2 107 aa11.43□□□□□ -0.58
LIMS3-201ENST00000437679 ZNF207O43670 478 aaKnown RBP11.43□□□□□ -0.58
LIMS3-201ENST00000437679 SCAF4O95104 1147 aaKnown RBP11.43□□□□□ -0.58
LIMS3-201ENST00000437679 CD7P09564 240 aa11.43□□□□□ -0.58
LIMS3-201ENST00000437679 VAMP1P23763 118 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms