RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 OR2C3Q8N628 320 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 SMIM8Q96KF7 97 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 SLC25A31Q9H0C2 315 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 LYRM2Q9NU23 88 aaPredicted RBP9.5□□□□□ -0.89
PTPRF-208ENST00000437607 STRAPQ9Y3F4 350 aaKnown RBP9.5□□□□□ -0.89
PTPRF-208ENST00000437607 LYSTQ99698 3801 aa9.5□□□□□ -0.89
PTPRF-208ENST00000437607 IGLC7A0M8Q6 106 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 TEX22C9J3V5 150 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 INS-IGF2F8WCM5 200 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 AMY1AP04745 511 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 OR13C7P0DN81 318 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 PF4V1P10720 104 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 SNCAP37840 140 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 HTR2BP41595 481 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 EGFEM1PQ0D2K5 195 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 TMEM267Q0VDI3 215 aaPredicted RBP9.49□□□□□ -0.89
PTPRF-208ENST00000437607 OR10W1Q8NGF6 305 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 FAM103A1Q9BTL3 118 aaKnown RBP9.49□□□□□ -0.89
PTPRF-208ENST00000437607 RNF126Q9BV68 326 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 C11orf1Q9H5F2 150 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 TNFSF18Q9UNG2 199 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 TSSC4Q9Y5U2 329 aaPredicted RBP9.49□□□□□ -0.89
PTPRF-208ENST00000437607 U3KQ87 197 aa9.49□□□□□ -0.89
PTPRF-208ENST00000437607 A0A1B0GW64 132 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 TCRBV4S1A1TA0A5B7 111 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 MSGN1A6NI15 193 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 CGB1A6NKQ9 187 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 HMSDA8MTL9 139 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 CYB5BO43169 146 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 TMEM50AO95807 157 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 PF4P02776 101 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 REG1AP05451 166 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 APELAP0DMC3 54 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 AREGP15514 252 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 RPL12P30050 165 aaKnown RBP9.48□□□□□ -0.89
PTPRF-208ENST00000437607 HOXD3P31249 432 aaPredicted RBP9.48□□□□□ -0.89
PTPRF-208ENST00000437607 NKX2-5P52952 324 aaPredicted RBP9.48□□□□□ -0.89
PTPRF-208ENST00000437607 SUB1P53999 127 aaKnown RBP eCLIP9.48□□□□□ -0.89
PTPRF-208ENST00000437607 RAB11AP62491 216 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 BAXQ07812 192 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 ZNF345Q14585 488 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 DEFB121Q5J5C9 76 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 TMEM65Q6PI78 240 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 ETV3LQ6ZN32 361 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 CENPVQ7Z7K6 275 aaPredicted RBP9.48□□□□□ -0.89
PTPRF-208ENST00000437607 LINC00482Q8N8I6 264 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 OR11H4Q8NGC9 324 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 RCC1LQ96I51 464 aaKnown RBP9.48□□□□□ -0.89
PTPRF-208ENST00000437607 AQP10Q96PS8 301 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 OR4C12Q96R67 309 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 MFFQ9GZY8 342 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 RYR2Q92736 4967 aa9.48□□□□□ -0.89
PTPRF-208ENST00000437607 STAB2Q8WWQ8 2551 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 IGSF23A1L1A6 192 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 RNF222A6NCQ9 220 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 FAM24AA6NFZ4 105 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 C15orf62A8K5M9 175 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 E7EUB6 86 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 AP4M1O00189 453 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 IGHG2P01859 326 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 IFNA4P05014 189 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 METTL15P1P0C7V9 234 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 C4BPBP20851 252 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 AP2S1P53680 142 aaPredicted RBP9.47□□□□□ -0.89
PTPRF-208ENST00000437607 HBG1P69891 147 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 HBG2P69892 147 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 EWSR1Q01844 656 aaKnown RBP eCLIP9.47□□□□□ -0.896e-7■■■■□ 25.8
PTPRF-208ENST00000437607 WT1-ASQ06250 92 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 OR2F1Q13607 317 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 UNQ5815/PRO19632Q6UWF5 114 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 ACOT7LQ6ZUV0 252 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 LILRB2Q8N423 598 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 TMEM252Q8N6L7 170 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 ZNF114Q8NC26 417 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 TMEM68Q96MH6 324 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 FBXO7Q9Y3I1 522 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 HSPB11Q9Y547 144 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 DNAH1Q9P2D7 4330 aa9.47□□□□□ -0.89
PTPRF-208ENST00000437607 TRAV41A0A0B4J266 112 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 NPIPB5A8MRT5 1133 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 CORTO00230 105 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 RNASE2P10153 161 aaKnown RBP9.46□□□□□ -0.9
PTPRF-208ENST00000437607 DEFA4P12838 97 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 SULT1A1P50225 295 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 CRIP2P52943 208 aaPredicted RBP9.46□□□□□ -0.9
PTPRF-208ENST00000437607 PAX9P55771 341 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 ATP5IP56385 69 aaPredicted RBP9.46□□□□□ -0.9
PTPRF-208ENST00000437607 C2orf83Q53S99 150 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 OR8G2PQ6IF36 304 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 TMEM14EPQ6UXP3 125 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 LFNGQ8NES3 379 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 OR1L6Q8NGR2 347 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 B9D2Q9BPU9 175 aa9.46□□□□□ -0.9
PTPRF-208ENST00000437607 F11RQ9Y624 299 aaKnown RBP9.46□□□□□ -0.9
PTPRF-208ENST00000437607 A0A0D9SG52 128 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 KANTRA0A1W2PQU2 76 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 CST7O76096 145 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 SLC38A11Q08AI6 406 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 BSXQ3C1V8 233 aa9.45□□□□□ -0.9
PTPRF-208ENST00000437607 C9orf62Q8N4C0 152 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms