RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 REG1BP48304 166 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 WNT2BQ93097 391 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 TMEM160Q9NX00 188 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 CCL26Q9Y258 94 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 AMBPP02760 352 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 SHANK3Q9BYB0 1731 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 OR2H2O95918 312 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 PRB4P10163 310 aaPredicted RBP6.1□□□□□ -1.43
VPS53-204ENST00000437048 HIVEP3Q5T1R4 2406 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 YPEL1O60688 119 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 C10orf91Q5T1B1 145 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 YPEL2Q96QA6 119 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 TRAV21A0A0B4J279 112 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 OVOL1O14753 267 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 RPS27P42677 84 aaKnown RBP6.1□□□□□ -1.43
VPS53-204ENST00000437048 ZNF525Q8N782 197 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 PIMREGQ9BSJ6 248 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 SPINK8P0C7L1 97 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 Q6ZVH6 145 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 BADQ92934 168 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 UNC119Q13432 240 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 Q6ZS52 159 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 HAPLN4Q86UW8 402 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 WFDC5Q8TCV5 224 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 ARHGAP32A7KAX9 2087 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 TRGV11A0A075B6L2 103 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 ZSWIM8A7E2V4 1837 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 LEPP41159 167 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 FUT5Q11128 374 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 RSPO3Q9BXY4 272 aaPredicted RBP6.09□□□□□ -1.43
VPS53-204ENST00000437048 NHP2Q9NX24 153 aaKnown RBP6.09□□□□□ -1.43
VPS53-204ENST00000437048 C1QL1O75973 258 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 PRSS12P56730 875 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 C15orf61A6NNL5 157 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 IGHV2-70P01814 119 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 COQ2Q96H96 371 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 SPATA25Q9BR10 227 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 PRR13Q9NZ81 148 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 C16orf97H3BN30 126 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 PPIHO43447 177 aaKnown RBP6.09□□□□□ -1.43
VPS53-204ENST00000437048 IFITM1P13164 125 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 DLL3Q9NYJ7 618 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 LOC389332A0A1B0GUA5 103 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 DUTP33316 252 aaKnown RBP6.09□□□□□ -1.43
VPS53-204ENST00000437048 GFRALQ6UXV0 394 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 COL5A3P25940 1745 aaPredicted RBP6.09□□□□□ -1.43
VPS53-204ENST00000437048 LINC01590Q5TEZ4 76 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 RNF166Q96A37 237 aaPredicted RBP6.09□□□□□ -1.43
VPS53-204ENST00000437048 C14orf144Q96I85 54 aa6.09□□□□□ -1.43
VPS53-204ENST00000437048 SPAG8Q99932 426 aaPredicted RBP6.09□□□□□ -1.43
VPS53-204ENST00000437048 DUSP15Q9H1R2 295 aaPredicted RBP6.09□□□□□ -1.43
VPS53-204ENST00000437048 TCRBV4S1A1TA0A5B7 111 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 GAGE12JA6NER3 117 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 GAGE7O76087 117 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 GAGE12FP0CL80 117 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 GAGE12GP0CL81 117 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 GAGE12IP0CL82 117 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 GAGE4Q13068 117 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 CBLN3Q6UW01 205 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 EML6Q6ZMW3 1958 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 IGHV4-34P06331 123 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 PF4V1P10720 104 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 WFDC6Q9BQY6 131 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 LCTP09848 1927 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 F12P00748 615 aaPredicted RBP6.09□□□□□ -1.44
VPS53-204ENST00000437048 MALP21145 153 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 TDGF1P3P51864 188 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 TMEM74BQ9NUR3 256 aa6.09□□□□□ -1.44
VPS53-204ENST00000437048 IGHV3-9P01782 118 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 MDKP21741 143 aaPredicted RBP6.08□□□□□ -1.44
VPS53-204ENST00000437048 INSL4Q14641 139 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 GOLT1AQ6ZVE7 132 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 FAM214BQ7L5A3 538 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 LINC00305Q7Z4B0 112 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 FOXC2Q99958 501 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 RPL32P62910 135 aaKnown RBP6.08□□□□□ -1.44
VPS53-204ENST00000437048 ZNF56Q15929 161 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 CXorf66Q5JRM2 361 aaPredicted RBP6.08□□□□□ -1.44
VPS53-204ENST00000437048 ASPHD2Q6ICH7 369 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 C18orf12Q96KH6 178 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 LINC00312Q9Y6C7 94 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 H7C2G1 150 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 C9orf153Q5TBE3 101 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 PRRT4C9JH25 899 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 CISD3P0C7P0 127 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 C3AR1Q16581 482 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 COA6Q5JTJ3 125 aaKnown RBP6.08□□□□□ -1.44
VPS53-204ENST00000437048 SYS1-DBNDD2H3BUS1 97 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 COL9A1P20849 921 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 GLRXP35754 106 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 MRPL14Q6P1L8 145 aaKnown RBP6.08□□□□□ -1.44
VPS53-204ENST00000437048 TMEM54Q969K7 222 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 GGTLC1Q9BX51 225 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 C6orf106Q9H6K1 298 aaPredicted RBP6.08□□□□□ -1.44
VPS53-204ENST00000437048 RNF186Q9NXI6 227 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 PGPEP1Q9NXJ5 209 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 IL6RP08887 468 aaPredicted RBP6.08□□□□□ -1.44
VPS53-204ENST00000437048 GRIFINA4D1Z8 144 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 CFAP161Q6P656 301 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms