RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 VENTXO95231 258 aa9.43□□□□□ -0.9
SCN4A-201ENST00000435607 NRXN3Q9Y4C0 1643 aa9.43□□□□□ -0.9
SCN4A-201ENST00000435607 CACNA1BQ00975 2339 aa9.43□□□□□ -0.9
SCN4A-201ENST00000435607 ZNF646O15015 1829 aaPredicted RBP9.43□□□□□ -0.9
SCN4A-201ENST00000435607 SHANK3Q9BYB0 1731 aa9.43□□□□□ -0.9
SCN4A-201ENST00000435607 PKIGQ9Y2B9 76 aa9.43□□□□□ -0.9
SCN4A-201ENST00000435607 GTF3C1Q12789 2109 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 TNFRSF14Q92956 283 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 F2Z2F3 143 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 RPL35AP18077 110 aaKnown RBP9.42□□□□□ -0.9
SCN4A-201ENST00000435607 CXCL3P19876 107 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 EFNA4P52798 201 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 SS18Q15532 418 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 BHLHA9Q7RTU4 235 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 MRPS18AQ9NVS2 196 aaKnown RBP9.42□□□□□ -0.9
SCN4A-201ENST00000435607 SPSB2Q99619 263 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 FOCADQ5VW36 1801 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 PAX4O43316 350 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 HBDP02042 147 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 MESP2Q0VG99 397 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 PPBPP02775 128 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 C2orf68Q2NKX9 166 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 OR9G9P0C7N8 305 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 FOXL2P58012 376 aa9.42□□□□□ -0.9
SCN4A-201ENST00000435607 NANOS3P60323 173 aaKnown RBP9.42□□□□□ -0.9
SCN4A-201ENST00000435607 TRAV41A0A0B4J266 112 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 A0A1B0GV72 72 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.41□□□□□ -0.9
SCN4A-201ENST00000435607 IGHV4-39P01824 125 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 ATXN8Q156A1 80 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 C1orf100Q5SVJ3 147 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 GATD1Q8NB37 220 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 DNAJC30Q96LL9 226 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 TRAV8-2A0A0B4J237 113 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 DPRXA6NFQ7 191 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 KLF4O43474 513 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 SLC25A16P16260 332 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 PRCDQ00LT1 54 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 FAM216BQ8N7L0 139 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 V9GYH0 126 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 TNFSF13O75888 250 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 IGLV1-36A0A0B4J1U3 117 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 VWC2LB2RUY7 222 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 IQCF6A8MYZ5 107 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 LTBP4Q8N2S1 1624 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 TRBV5-5A0A0J9YX44 114 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 P2RY4P51582 365 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 EGR4Q05215 589 aa9.41□□□□□ -0.9
SCN4A-201ENST00000435607 ZNHIT1O43257 154 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 KLHL30-AS1Q8NEE0 82 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 OR11H7Q8NGC8 314 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 RNF125Q96EQ8 232 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 ARAP2Q8WZ64 1704 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 IGKV1D-42A0A075B6H8 117 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 TRGV1A0A0A0MS02 117 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 M0R2P5 195 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 C6orf226Q5I0X4 101 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 UNQ6494/PRO21346Q6UXR6 183 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 LINC01356Q8N9X3 169 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 KLF12Q9Y4X4 402 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 CRYBA2P53672 197 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 OR10W1Q8NGF6 305 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 PRDM6Q9NQX0 595 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 ATAD5Q96QE3 1844 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 GRIFINA4D1Z8 144 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 GCM2O75603 506 aaPredicted RBP9.4□□□□□ -0.9
SCN4A-201ENST00000435607 MCRIP2Q9BUT9 160 aaKnown RBP9.4□□□□□ -0.9
SCN4A-201ENST00000435607 TMEM126AQ9H061 195 aa9.4□□□□□ -0.9
SCN4A-201ENST00000435607 MINOS1Q5TGZ0 78 aa9.4□□□□□ -0.91
SCN4A-201ENST00000435607 NRTNQ99748 197 aa9.4□□□□□ -0.91
SCN4A-201ENST00000435607 MINOS1-NBL1R4GNA1 71 aa9.4□□□□□ -0.91
SCN4A-201ENST00000435607 IGHV1-2P23083 117 aa9.4□□□□□ -0.91
SCN4A-201ENST00000435607 RBMY1FQ15415 496 aaKnown RBP9.4□□□□□ -0.91
SCN4A-201ENST00000435607 SPSB3Q6PJ21 355 aa9.4□□□□□ -0.91
SCN4A-201ENST00000435607 RASL10AQ92737 203 aa9.4□□□□□ -0.91
SCN4A-201ENST00000435607 IL36BQ9NZH7 164 aa9.4□□□□□ -0.91
SCN4A-201ENST00000435607 IGFBP2P18065 325 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 ERCC8Q13216 396 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 TUBGCP6Q96RT7 1819 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 MDKP21741 143 aaPredicted RBP9.39□□□□□ -0.91
SCN4A-201ENST00000435607 COQ2Q96H96 371 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 TRAV2A0A0B4J234 112 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 TRAV9-1A0A075B6T8 112 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 IGHV3OR16-8A0A075B7F1 116 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 DPM2O94777 84 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 IL18BPO95998 194 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 ZNF708P17019 499 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 C9orf62Q8N4C0 152 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 NHSL1Q5SYE7 1610 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 COL22A1Q8NFW1 1626 aaPredicted RBP9.39□□□□□ -0.91
SCN4A-201ENST00000435607 PSPNO60542 156 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 CGAP01215 116 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 COL6A6A6NMZ7 2263 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 OOSP1A8MZH6 123 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 TNFRSF6BO95407 300 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 ZNF562Q6V9R5 426 aa9.39□□□□□ -0.91
SCN4A-201ENST00000435607 CNOT1A5YKK6 2376 aaKnown RBP9.38□□□□□ -0.91
SCN4A-201ENST00000435607 TRBV7-1A0A0A6YYK4 115 aa9.38□□□□□ -0.91
SCN4A-201ENST00000435607 YPEL1O60688 119 aa9.38□□□□□ -0.91
SCN4A-201ENST00000435607 F12P00748 615 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms