RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 SCN2AQ99250 2005 aa12.87□□□□□ -0.35
PTPRF-206ENST00000429895 A0A0U1RRA0 63 aa12.87□□□□□ -0.35
PTPRF-206ENST00000429895 CIARTQ8N365 385 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-206ENST00000429895 FBLIM1Q8WUP2 373 aa12.87□□□□□ -0.35
PTPRF-206ENST00000429895 SDHCQ99643 169 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-206ENST00000429895 RTBDNQ9BSG5 229 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-206ENST00000429895 UPK2O00526 184 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 DEFB104AQ8WTQ1 72 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 EVI2AP22794 236 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 RNASE7Q9H1E1 156 aaKnown RBP12.86□□□□□ -0.35
PTPRF-206ENST00000429895 OTORQ9NRC9 128 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 A0A1B0GWB2 263 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 PQLC2LA1A4F0 135 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 ERVH48-1M5A8F1 160 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 TMEM219Q86XT9 240 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 SSBP4Q9BWG4 385 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-206ENST00000429895 DLEC1Q9Y238 1755 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 HIGD1CA8MV81 97 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 TIMM23O14925 209 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 SAMD13Q5VXD3 122 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 TCF23Q7RTU1 214 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 ORMDL3Q8N138 153 aa12.86□□□□□ -0.35
PTPRF-206ENST00000429895 IGHV3-64A0A075B6Q5 118 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 VENTXO95231 258 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 IGHV1-18A0A0C4DH31 117 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 IFI27P40305 119 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-206ENST00000429895 CHCHD5Q9BSY4 110 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 ATAD5Q96QE3 1844 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 PINLYPA6NC86 204 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 RAMP3O60896 148 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 RIPPLY3P57055 190 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 PSMG4Q5JS54 123 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 FAM90A1Q86YD7 464 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 RNF125Q96EQ8 232 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 ERVK11-1P61568 191 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 DEPPQ9NTK1 212 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 UBR3Q6ZT12 1888 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 ICE1Q9Y2F5 2266 aa12.85□□□□□ -0.35
PTPRF-206ENST00000429895 PYYP10082 97 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 FAM209BQ5JX69 171 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 MRPL14Q6P1L8 145 aaKnown RBP12.84□□□□□ -0.35
PTPRF-206ENST00000429895 PIKFYVEQ9Y2I7 2098 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 FABP5P3A8MUU1 101 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 WNT2P09544 360 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 IGHV3-73A0A0B4J1V6 119 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 LINC00614P0C842 121 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 UCP1P25874 307 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 FAM89BQ8N5H3 189 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 NEUROG1Q92886 237 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 DUSP14O95147 198 aaKnown RBP12.84□□□□□ -0.35
PTPRF-206ENST00000429895 ZNF688P0C7X2 276 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 NHLRC3Q5JS37 347 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 CACNG8Q8WXS5 425 aa12.84□□□□□ -0.35
PTPRF-206ENST00000429895 IZUMO1RA6ND01 250 aa12.83□□□□□ -0.35
PTPRF-206ENST00000429895 CD28P10747 220 aa12.83□□□□□ -0.35
PTPRF-206ENST00000429895 MORN2Q502X0 79 aa12.83□□□□□ -0.35
PTPRF-206ENST00000429895 PEF1Q9UBV8 284 aaKnown RBP12.83□□□□□ -0.35
PTPRF-206ENST00000429895 OR5A1Q8NGJ0 315 aa12.83□□□□□ -0.36
PTPRF-206ENST00000429895 VWCEQ96DN2 955 aa12.83□□□□□ -0.36
PTPRF-206ENST00000429895 WBP1Q96G27 269 aa12.83□□□□□ -0.36
PTPRF-206ENST00000429895 SVILO95425 2214 aa12.83□□□□□ -0.36
PTPRF-206ENST00000429895 CD55P08174 381 aa12.83□□□□□ -0.36
PTPRF-206ENST00000429895 SRSF7Q16629 238 aaKnown RBP eCLIP12.83□□□□□ -0.364e-7■■■■□ 20.9
PTPRF-206ENST00000429895 KLRD1Q13241 179 aa12.83□□□□□ -0.36
PTPRF-206ENST00000429895 ADARB2-AS1A8MUL3 147 aa12.83□□□□□ -0.36
PTPRF-206ENST00000429895 CD8AP01732 235 aa12.83□□□□□ -0.36
PTPRF-206ENST00000429895 RPL35AP18077 110 aaKnown RBP12.83□□□□□ -0.36
PTPRF-206ENST00000429895 RP1P56715 2156 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 OTOFQ9HC10 1997 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 A0A1B0GV72 72 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 GNLYP22749 145 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 FOXF2Q12947 444 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 SLC50A1Q9BRV3 221 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 IGKV1D-13A0A0B4J2D9 117 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 SHISA3A0PJX4 238 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 IGKV1-13P0DP09 117 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 TDGF1P3P51864 188 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 PAX8Q06710 450 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 VMO1Q7Z5L0 202 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 ZNF525Q8N782 197 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 ZNF257Q9Y2Q1 563 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 RGPD3A6NKT7 1758 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-206ENST00000429895 APC2O95996 2303 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 FXYD7P58549 80 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 TRAV2A0A0B4J234 112 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 TRAV21A0A0B4J279 112 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 C15orf61A6NNL5 157 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 VKORC1Q9BQB6 163 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 ARFGEF1Q9Y6D6 1849 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 LYZL4Q96KX0 146 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 ASCL2Q99929 193 aa12.82□□□□□ -0.36
PTPRF-206ENST00000429895 SEPSECSQ9HD40 501 aaKnown RBP12.82□□□□□ -0.36
PTPRF-206ENST00000429895 YPEL1O60688 119 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 EFNB1P98172 346 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 PAX2Q02962 417 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 PVRIGQ6DKI7 326 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 YPEL2Q96QA6 119 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 COL4A1P02462 1669 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 SIGLEC15Q6ZMC9 328 aa12.81□□□□□ -0.36
PTPRF-206ENST00000429895 PHLDA1Q8WV24 401 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms