RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 CLEC2AQ6UVW9 174 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 DPH3Q96FX2 82 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 AICDAQ9GZX7 198 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 CACNA1HO95180 2353 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 RALGAPA2Q2PPJ7 1873 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 SYNGR3O43761 229 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 ATP5G2Q06055 141 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 MBD3L1Q8WWY6 194 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 NAA38Q9BRA0 125 aaKnown RBP12.17□□□□□ -0.46
PTPRU-204ENST00000428026 TGFBR3LH3BV60 316 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 AMBPP02760 352 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 RFPL3SP0C7P2 107 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 LEPP41159 167 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 IGHV3OR16-10A0A075B7F0 116 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 TRAV9-2A0A087WT02 112 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 ATP5LO75964 103 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 PAPPA-AS1Q5QFB9 102 aa12.17□□□□□ -0.46
PTPRU-204ENST00000428026 ACP7Q6ZNF0 438 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 FBXL15Q9H469 300 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 CTSSP25774 331 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 CLEC7AQ9BXN2 247 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 A0A1W2PRS3 328 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 ORMDL3Q8N138 153 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 OR5AN1Q8NGI8 311 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 DUX5Q96PT3 197 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 GFI1Q99684 422 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 Q9H3A6 140 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 NPIPB13A6NJU9 1138 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 OCC1Q8TAD7 63 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 NPFFO15130 113 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 TSPOP30536 169 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 DNM1P46Q6ZS02 220 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 OR5A1Q8NGJ0 315 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 CACNA1BQ00975 2339 aa12.16□□□□□ -0.46
PTPRU-204ENST00000428026 TRAV9-1A0A075B6T8 112 aa12.15□□□□□ -0.46
PTPRU-204ENST00000428026 FMC1Q96HJ9 113 aa12.15□□□□□ -0.46
PTPRU-204ENST00000428026 ZNF257Q9Y2Q1 563 aa12.15□□□□□ -0.46
PTPRU-204ENST00000428026 PATJQ8NI35 1801 aa12.15□□□□□ -0.46
PTPRU-204ENST00000428026 TTC28Q96AY4 2481 aa12.15□□□□□ -0.46
PTPRU-204ENST00000428026 IGHV4-39P01824 125 aa12.15□□□□□ -0.47
PTPRU-204ENST00000428026 CACNG7P62955 275 aa12.15□□□□□ -0.47
PTPRU-204ENST00000428026 IGKV1D-8A0A087WSZ0 117 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 TRAV12-3A0A0B4J271 114 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 TMEM262E9PQX1 116 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 CEACAM4O75871 244 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 CELA3AP09093 270 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 CHODLQ9H9P2 273 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 NEUROG3Q9Y4Z2 214 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 FER1L6-AS1Q8NA97 138 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 ELOVL5Q9NYP7 299 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 COL4A6Q14031 1691 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 CD5P06127 495 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 PLPPR1Q8TBJ4 325 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 NDUFA2O43678 99 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 RAMP3O60896 148 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 LINC00114Q6XXX2 140 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 FAM216BQ8N7L0 139 aa12.14□□□□□ -0.47
PTPRU-204ENST00000428026 PYYP10082 97 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 LY6DQ14210 128 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 REG4Q9BYZ8 158 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 SCN8AQ9UQD0 1980 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 SDK2Q58EX2 2172 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 TFF1P04155 84 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 SPACA3Q8IXA5 215 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 RNASEH2CQ8TDP1 164 aaKnown RBP12.13□□□□□ -0.47
PTPRU-204ENST00000428026 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.13□□□□□ -0.47
PTPRU-204ENST00000428026 RAB9AP51151 201 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 VKORC1Q9BQB6 163 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 RFNGQ9Y644 331 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 MGAMO43451 1857 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 A0A0A6YYD4 124 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 ASIPP42127 132 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 EEF1AKMT3Q96AZ1 226 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 ANAPC13Q9BS18 74 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 IGKV1-9A0A0C4DH69 117 aa12.13□□□□□ -0.47
PTPRU-204ENST00000428026 NUTF2P61970 127 aaKnown RBP12.13□□□□□ -0.47
PTPRU-204ENST00000428026 ZFP36L1Q07352 338 aaKnown RBP12.13□□□□□ -0.47
PTPRU-204ENST00000428026 PRB3Q04118 309 aaPredicted RBP12.12□□□□□ -0.47
PTPRU-204ENST00000428026 FAM71F2Q6NXP2 309 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 PAQR4Q8N4S7 273 aaPredicted RBP12.12□□□□□ -0.47
PTPRU-204ENST00000428026 JMJD8Q96S16 334 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 SIGMAR1Q99720 223 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 MRPL20Q9BYC9 149 aaKnown RBP12.12□□□□□ -0.47
PTPRU-204ENST00000428026 CRIM1Q9NZV1 1036 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 THADAQ6YHU6 1953 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 ATP5IP56385 69 aaPredicted RBP12.12□□□□□ -0.47
PTPRU-204ENST00000428026 HEATR5BQ9P2D3 2071 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 UMODP07911 640 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 ORAOV1Q8WV07 137 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 IGKV3D-20A0A0C4DH25 116 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 PYY3Q5JQD4 70 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 BEND2Q8NDZ0 799 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 NUDT10Q8NFP7 164 aa12.12□□□□□ -0.47
PTPRU-204ENST00000428026 OSR1Q8TAX0 266 aaPredicted RBP12.12□□□□□ -0.47
PTPRU-204ENST00000428026 SNRPD3P62318 126 aaKnown RBP12.11□□□□□ -0.47
PTPRU-204ENST00000428026 MRPL14Q6P1L8 145 aaKnown RBP12.11□□□□□ -0.47
PTPRU-204ENST00000428026 CHCHD2Q9Y6H1 151 aaPredicted RBP12.11□□□□□ -0.47
PTPRU-204ENST00000428026 LOC105371242A0A075B767 164 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 IGHV1-69-2A0A0G2JMI3 117 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 HAX1O00165 279 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms