RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 HMCN1Q96RW7 5635 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 ACOD1A6NK06 481 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 EBAG9O00559 213 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 NCR3O14931 201 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 RER1O15258 196 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 COX7A2P2O60397 106 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 FGF2P09038 288 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TRAPPC2P0DI81 140 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TRAPPC2BP0DI82 140 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 AZU1P20160 251 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 LINC00315P59091 139 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 HOXC5Q00444 222 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SS18Q15532 418 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 RPS26P11Q5JNZ5 115 aaPredicted RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SPANXN2Q5MJ10 180 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 ATP11AUNQ6ZP68 121 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 STPG4Q8N801 248 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 OR1S1Q8NH92 325 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 DNAJC9Q8WXX5 260 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 CAMK2N2Q96S95 79 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 DSCR8Q96T75 97 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 PRO0255Q9UI72 69 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 NUP98P52948 1817 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 MYH1P12882 1939 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 NBEAQ8NFP9 2946 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SAA2-SAA4A0A096LPE2 208 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 F6UZH7 168 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SOCS1O15524 211 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 CHP2O43745 196 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 AREGP15514 252 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 RPL7P18124 248 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TNFRSF1BP20333 461 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM97Q5BJF2 176 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SPATA31B1PQ5VZV4 182 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 FA2HQ7L5A8 372 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 PCP2Q8IVA1 136 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 CD177Q8N6Q3 437 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 OR1L4Q8NGR5 311 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 FAM46BQ96A09 425 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 KLHDC3Q9BQ90 382 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 KRTAP9-2Q9BYQ4 174 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 POLR2J3Q9H1A7 115 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TPT1P8Q9HAU6 139 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 MRPL16Q9NX20 251 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TAS2R8Q9NYW2 309 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SIPA1L1O43166 1804 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 ANKRD31Q8N7Z5 1873 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SIPA1L3O60292 1781 aaPredicted RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TRAV6A0A075B6T7 132 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 A0A0G2JRQ6 117 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 A6NDX4 124 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TMEM235A6NFC5 223 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 LGALS16A8MUM7 142 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 H3BUA1 57 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 H7BYZ3 331 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 CTXN2P0C2S0 81 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 MAPK3P27361 379 aaPredicted RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 POLR2JP52435 117 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SUMO2P61956 95 aaKnown RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 UBE2HP62256 183 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 KLF5Q13887 457 aaPredicted RBP2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 FBXL16Q8N461 479 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 LY6G5BQ8NDX9 201 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 OR51H1Q8NH63 302 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 GLYATL2Q8WU03 294 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SCGB3A2Q96PL1 93 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SELENOIQ9C0D9 397 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 TREM1Q9NP99 234 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 BAIAP2Q9UQB8 552 aa2.05□□□□□ -2.08
CCDC88A-205ENST00000426576 SCN8AQ9UQD0 1980 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 MAST2Q6P0Q8 1798 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 TEX46H3BTG2 121 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 TRAF3IP2O43734 574 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 GADD45GO95257 159 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 CSN2P05814 226 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 MGMTP16455 207 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 BTF3P20290 206 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 IMPDH1P20839 514 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 CNN1P51911 297 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 FOXI1Q12951 378 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 PKP1Q13835 747 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 RHOHQ15669 191 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 CGB2Q6NT52 195 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 FAM19A1Q7Z5A9 133 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ZDHHC21Q8IVQ6 265 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 Q8N7P7 452 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 DRAXINQ8NBI3 349 aaPredicted RBP2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 SRSF12Q8WXF0 261 aaKnown RBP2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF702PQ9H963 129 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ADGRL4Q9HBW9 690 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ABHD10Q9NUJ1 306 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 BTNL2Q9UIR0 455 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF257Q9Y2Q1 563 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 MYH11P35749 1972 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 TRAV8-7A0A075B6U6 113 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 GAGE12JA6NER3 117 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 DISC1C4P0D8 188 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 K7EP13 123 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 MRASO14807 208 aa2.04□□□□□ -2.08
CCDC88A-205ENST00000426576 PRKYO43930 277 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 184.8 ms