RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 RUNX1Q01196 453 aa13.16□□□□□ -0.3
COL7A1-202ENST00000422991 ATP5G2Q06055 141 aa13.16□□□□□ -0.3
COL7A1-202ENST00000422991 EXOSC2Q13868 293 aaKnown RBP13.16□□□□□ -0.3
COL7A1-202ENST00000422991 FCN2Q15485 313 aa13.16□□□□□ -0.3
COL7A1-202ENST00000422991 C2orf83Q53S99 150 aa13.16□□□□□ -0.3
COL7A1-202ENST00000422991 TMEM170AQ8WVE7 144 aa13.16□□□□□ -0.3
COL7A1-202ENST00000422991 NMES1Q9C002 83 aa13.16□□□□□ -0.3
COL7A1-202ENST00000422991 THYN1Q9P016 225 aa13.16□□□□□ -0.3
COL7A1-202ENST00000422991 U3KQ87 197 aa13.16□□□□□ -0.3
COL7A1-202ENST00000422991 MFSD2BA6NFX1 497 aa13.15□□□□□ -0.3
COL7A1-202ENST00000422991 K7EIM0 57 aa13.15□□□□□ -0.3
COL7A1-202ENST00000422991 K7EPK0 472 aa13.15□□□□□ -0.3
COL7A1-202ENST00000422991 IFNA10P01566 189 aa13.15□□□□□ -0.3
COL7A1-202ENST00000422991 CXCL3P19876 107 aa13.15□□□□□ -0.3
COL7A1-202ENST00000422991 RRAS2P62070 204 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-202ENST00000422991 C8orf86Q6ZUL3 223 aa13.15□□□□□ -0.3
COL7A1-202ENST00000422991 OR11H7Q8NGC8 314 aa13.15□□□□□ -0.3
COL7A1-202ENST00000422991 MISP3Q96FF7 219 aa13.15□□□□□ -0.3
COL7A1-202ENST00000422991 OR5B12Q96R08 314 aa13.15□□□□□ -0.3
COL7A1-202ENST00000422991 CORTO00230 105 aa13.14□□□□□ -0.31
COL7A1-202ENST00000422991 TMEM50AO95807 157 aa13.14□□□□□ -0.31
COL7A1-202ENST00000422991 ATP5IP56385 69 aaPredicted RBP13.14□□□□□ -0.31
COL7A1-202ENST00000422991 CYCSP99999 105 aaKnown RBP13.14□□□□□ -0.31
COL7A1-202ENST00000422991 RAB32Q13637 225 aa13.14□□□□□ -0.31
COL7A1-202ENST00000422991 DEFB136Q30KP8 78 aa13.14□□□□□ -0.31
COL7A1-202ENST00000422991 ZNF343Q6P1L6 599 aa13.14□□□□□ -0.31
COL7A1-202ENST00000422991 VN1R17PQ8TDU5 208 aa13.14□□□□□ -0.31
COL7A1-202ENST00000422991 WDR89Q96FK6 387 aaPredicted RBP13.14□□□□□ -0.31
COL7A1-202ENST00000422991 CXorf58Q96LI9 332 aa13.14□□□□□ -0.31
COL7A1-202ENST00000422991 OR4C12Q96R67 309 aa13.14□□□□□ -0.31
COL7A1-202ENST00000422991 RAB40CQ96S21 281 aa13.14□□□□□ -0.31
COL7A1-202ENST00000422991 LSM5Q9Y4Y9 91 aaKnown RBP13.14□□□□□ -0.31
COL7A1-202ENST00000422991 C15orf62A8K5M9 175 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 I3L2K1 104 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 M0QZ24 198 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 MT-CO2P00403 227 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 PAX9P55771 341 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 S100A10P60903 97 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 Q6ZNX1 250 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 NOXA1Q86UR1 476 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 ZNF502Q8TBZ5 544 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 EEF1AKMT3Q96AZ1 226 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 SMIM8Q96KF7 97 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 CCDC140Q96MF4 163 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 C11orf1Q9H5F2 150 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 S4R3C0 116 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 TRRAPQ9Y4A5 3859 aa13.13□□□□□ -0.31
COL7A1-202ENST00000422991 WNK1Q9H4A3 2382 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 IGHV3-21A0A0B4J1V1 117 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 H3BP45 60 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 TSPAN15O95858 294 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 IGHV3-23P01764 117 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 TAS2R30P59541 319 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 ETV3LQ6ZN32 361 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 OR4F17Q8NGA8 305 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 RNASEH2CQ8TDP1 164 aaKnown RBP13.12□□□□□ -0.31
COL7A1-202ENST00000422991 SCARB1Q8WTV0 552 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 PINX1Q96BK5 328 aaKnown RBP13.12□□□□□ -0.31
COL7A1-202ENST00000422991 RAX2Q96IS3 184 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 OR4F4Q96R69 305 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 PSENENQ9NZ42 101 aa13.12□□□□□ -0.31
COL7A1-202ENST00000422991 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.11□□□□□ -0.31
COL7A1-202ENST00000422991 TRBV7-1A0A0A6YYK4 115 aa13.11□□□□□ -0.31
COL7A1-202ENST00000422991 TSC22D2O75157 780 aa13.11□□□□□ -0.31
COL7A1-202ENST00000422991 TRBV12-3P01733 135 aa13.11□□□□□ -0.31
COL7A1-202ENST00000422991 RPP30P78346 268 aaKnown RBP13.11□□□□□ -0.31
COL7A1-202ENST00000422991 FAM209BQ5JX69 171 aa13.11□□□□□ -0.31
COL7A1-202ENST00000422991 SPANXN5Q5MJ07 72 aa13.11□□□□□ -0.31
COL7A1-202ENST00000422991 PPP1R1CQ8WVI7 109 aa13.11□□□□□ -0.31
COL7A1-202ENST00000422991 FNDC4Q9H6D8 234 aaPredicted RBP13.11□□□□□ -0.31
COL7A1-202ENST00000422991 C21orf62Q9NYP8 219 aa13.11□□□□□ -0.31
COL7A1-202ENST00000422991 STRAPQ9Y3F4 350 aaKnown RBP13.11□□□□□ -0.31
COL7A1-202ENST00000422991 IGHV4OR15-8A0A075B7B6 117 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 A0A087WW49 117 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 ANKRD34BA5PLL1 514 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 L7N2F9 121 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 CCL24O00175 119 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 DEDDO75618 318 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 OR8U8P0C7N1 319 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 OPRK1P41145 380 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 VAMP2P63027 116 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 FHL3Q13643 280 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 LRRC37A5PQ49AS3 106 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 PRR31Q5SQ13 230 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 OR11H1Q8NG94 326 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 DUX3Q96PT4 197 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 ATP6V0BQ99437 205 aa13.1□□□□□ -0.31
COL7A1-202ENST00000422991 ZNF436Q9C0F3 470 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-202ENST00000422991 PEF1Q9UBV8 284 aaKnown RBP13.1□□□□□ -0.31
COL7A1-202ENST00000422991 RPS10-NUDT3A0A1W2PQS6 291 aa13.09□□□□□ -0.31
COL7A1-202ENST00000422991 F8W735 103 aaPredicted RBP13.09□□□□□ -0.31
COL7A1-202ENST00000422991 IGHV3-48P01763 117 aa13.09□□□□□ -0.31
COL7A1-202ENST00000422991 HSPB1P04792 205 aaKnown RBP13.09□□□□□ -0.31
COL7A1-202ENST00000422991 IFNA4P05014 189 aa13.09□□□□□ -0.31
COL7A1-202ENST00000422991 GIPP09681 153 aaPredicted RBP13.09□□□□□ -0.31
COL7A1-202ENST00000422991 PVALBP20472 110 aaPredicted RBP13.09□□□□□ -0.31
COL7A1-202ENST00000422991 RAB11AP62491 216 aa13.09□□□□□ -0.31
COL7A1-202ENST00000422991 ZNF616Q08AN1 781 aa13.09□□□□□ -0.31
COL7A1-202ENST00000422991 TMEM14EPQ6UXP3 125 aa13.09□□□□□ -0.31
COL7A1-202ENST00000422991 CLEC19AQ6UXS0 136 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms