RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 ZNF703Q9H7S9 590 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-210ENST00000409694 DOCK3Q8IZD9 2030 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 A0A1B0GTL3 188 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 FOXA3P55318 350 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-210ENST00000409694 NRN1Q9NPD7 142 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 TAF1LQ8IZX4 1826 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 C1QL3Q5VWW1 255 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 ZNF385AQ96PM9 386 aaKnown RBP6.68□□□□□ -1.34
SYNE1-210ENST00000409694 KIAA2026Q5HYC2 2103 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 KLF14Q8TD94 323 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-210ENST00000409694 TMEM170AQ8WVE7 144 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 OVOL1O14753 267 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 ANAPC10Q9UM13 185 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 GREB1Q4ZG55 1949 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 LINC01565O15544 149 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 PAX4O43316 350 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 HLA-DQB1P01920 261 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 CGAP01215 116 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 CISD3P0C7P0 127 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 TEX43Q6ZNM6 134 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 Q6ZS52 159 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 SBF2Q86WG5 1849 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 IGKV3D-20A0A0C4DH25 116 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 LDLRAD4O15165 306 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 PMVKQ15126 192 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 LRRK1Q38SD2 2015 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 DPM3Q9P2X0 92 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 SIPA1L3O60292 1781 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-210ENST00000409694 SCO2A0A1W2PP80 73 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 FAM90A2PQ658T7 463 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 SLC25A47Q6Q0C1 308 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 CHCHD5Q9BSY4 110 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 A0A1W2PRS3 328 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 UPK3AO75631 287 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 IGKV1D-33P01593 117 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 IGKV1-33P01594 117 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 SNRPCP09234 159 aaKnown RBP6.67□□□□□ -1.34
SYNE1-210ENST00000409694 PEX11BO96011 259 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 HTN3P15516 51 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 FAM168AQ92567 244 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 PILRBQ9UKJ0 227 aa6.67□□□□□ -1.34
SYNE1-210ENST00000409694 SBF1O95248 1867 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 SNAI2O43623 268 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 ERCC8Q13216 396 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 C9orf153Q5TBE3 101 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 PLSCR4Q9NRQ2 329 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 NANOS3P60323 173 aaKnown RBP6.66□□□□□ -1.34
SYNE1-210ENST00000409694 UBE2WQ96B02 151 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 KCNK17Q96T54 332 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 SIGLEC14Q08ET2 396 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 NRN1LQ496H8 165 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 ST6GALNAC6Q969X2 333 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 SHANK3Q9BYB0 1731 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 PEAR1Q5VY43 1037 aaPredicted RBP6.66□□□□□ -1.34
SYNE1-210ENST00000409694 ACP7Q6ZNF0 438 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 OSTCQ9NRP0 149 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 SRD5A1P18405 259 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 SLC25A48Q6ZT89 311 aaKnown RBP6.66□□□□□ -1.34
SYNE1-210ENST00000409694 CITED1Q99966 193 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 MYMXA0A1B0GTQ4 84 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 TMEM8BA6NDV4 472 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 CD300CQ08708 224 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 GAGE2AQ6NT46 116 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 TPRX1Q8N7U7 411 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 KLHDC2Q9Y2U9 406 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 TRBV5-7A0A0A0MS05 114 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 DRD3P35462 400 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 CCL20P78556 96 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 OCIAD2Q56VL3 154 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 FAM166AQ6J272 317 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 C16orf47Q6ZP98 133 aaPredicted RBP6.66□□□□□ -1.34
SYNE1-210ENST00000409694 NEGR1Q7Z3B1 354 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 WBP1LQ9NX94 342 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 INS-IGF2F8WCM5 200 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 SERF1AO75920 110 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 INSP01308 110 aa6.66□□□□□ -1.34
SYNE1-210ENST00000409694 WDR81Q562E7 1941 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 A0A087WX48 190 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 SIGLEC15Q6ZMC9 328 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 PPP1R3EQ9H7J1 279 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 KLF4O43474 513 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 TRACP01848 142 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 ZP1P60852 638 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 LINC00312Q9Y6C7 94 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 PTPRFP10586 1907 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 SOCS3O14543 225 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 NBR2O15453 112 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 SS18Q15532 418 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 IFI27L1Q96BM0 104 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 SNHG12Q9BXW3 62 aa6.65□□□□□ -1.34
SYNE1-210ENST00000409694 RSPO3Q9BXY4 272 aaPredicted RBP6.65□□□□□ -1.34
SYNE1-210ENST00000409694 MYEOVQ96EZ4 313 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 C1QAP02745 245 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 C1QTNF9P0C862 333 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 CLEC19AQ6UXS0 136 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 C15orf61A6NNL5 157 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 MLNRO43193 412 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 SELLP14151 372 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 C1QTNF4Q9BXJ3 329 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 YBX2Q9Y2T7 364 aaKnown RBP6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms