RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 OR2C1O95371 312 aa16.58■□□□□ 0.24
CLN3-207ENST00000395653 HLA-AP01891 365 aaKnown RBP16.58■□□□□ 0.24
CLN3-207ENST00000395653 SUB1P53999 127 aaKnown RBP eCLIP16.58■□□□□ 0.24
CLN3-207ENST00000395653 PVRIGQ6DKI7 326 aa16.58■□□□□ 0.24
CLN3-207ENST00000395653 GPHB5Q86YW7 130 aa16.58■□□□□ 0.24
CLN3-207ENST00000395653 MISP3Q96FF7 219 aa16.58■□□□□ 0.24
CLN3-207ENST00000395653 PEMTQ9UBM1 199 aa16.58■□□□□ 0.24
CLN3-207ENST00000395653 TMED3Q9Y3Q3 217 aa16.58■□□□□ 0.24
CLN3-207ENST00000395653 I3L2K1 104 aa16.57■□□□□ 0.24
CLN3-207ENST00000395653 OR4E1P0C645 316 aa16.57■□□□□ 0.24
CLN3-207ENST00000395653 RNASE2P10153 161 aaKnown RBP16.57■□□□□ 0.24
CLN3-207ENST00000395653 DHRS2Q13268 280 aa16.57■□□□□ 0.24
CLN3-207ENST00000395653 BSXQ3C1V8 233 aa16.57■□□□□ 0.24
CLN3-207ENST00000395653 IL34Q6ZMJ4 242 aa16.57■□□□□ 0.24
CLN3-207ENST00000395653 C20orf85Q9H1P6 137 aa16.57■□□□□ 0.24
CLN3-207ENST00000395653 SIGLEC8Q9NYZ4 499 aa16.57■□□□□ 0.24
CLN3-207ENST00000395653 IGHV3-21A0A0B4J1V1 117 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 CEBPZOSA8MTT3 80 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 LGALS9O00182 355 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 CORTO00230 105 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 TGOLN2O43493 480 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 UPK1BO75841 260 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 SLC25A6P12236 298 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 ANXA7P20073 488 aaKnown RBP16.56■□□□□ 0.24
CLN3-207ENST00000395653 FCGR2BP31994 310 aaPredicted RBP16.56■□□□□ 0.24
CLN3-207ENST00000395653 PLET1Q6UQ28 207 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 LYG2Q86SG7 212 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 BSCL2Q96G97 398 aaPredicted RBP16.56■□□□□ 0.24
CLN3-207ENST00000395653 HSPB7Q9UBY9 170 aa16.56■□□□□ 0.24
CLN3-207ENST00000395653 MT-CO2P00403 227 aa16.55■□□□□ 0.24
CLN3-207ENST00000395653 TCRBP04435 133 aa16.55■□□□□ 0.24
CLN3-207ENST00000395653 HTR2BP41595 481 aa16.55■□□□□ 0.24
CLN3-207ENST00000395653 TNFRSF9Q07011 255 aa16.55■□□□□ 0.24
CLN3-207ENST00000395653 ASAH1Q13510 395 aa16.55■□□□□ 0.24
CLN3-207ENST00000395653 FAM106AQ4KMX7 169 aa16.55■□□□□ 0.24
CLN3-207ENST00000395653 PINX1Q96BK5 328 aaKnown RBP16.55■□□□□ 0.24
CLN3-207ENST00000395653 HEYLQ9NQ87 328 aaPredicted RBP16.55■□□□□ 0.24
CLN3-207ENST00000395653 GAR1Q9NY12 217 aaKnown RBP16.55■□□□□ 0.24
CLN3-207ENST00000395653 TBC1D24Q9ULP9 559 aa16.55■□□□□ 0.24
CLN3-207ENST00000395653 F8W735 103 aaPredicted RBP16.54■□□□□ 0.24
CLN3-207ENST00000395653 PITX3O75364 302 aa16.54■□□□□ 0.24
CLN3-207ENST00000395653 IGLV1-51P01701 117 aa16.54■□□□□ 0.24
CLN3-207ENST00000395653 C4orf46Q504U0 113 aa16.54■□□□□ 0.24
CLN3-207ENST00000395653 SPSB3Q6PJ21 355 aa16.54■□□□□ 0.24
CLN3-207ENST00000395653 OR1S1Q8NH92 325 aa16.54■□□□□ 0.24
CLN3-207ENST00000395653 TXN2Q99757 166 aa16.54■□□□□ 0.24
CLN3-207ENST00000395653 ZC4H2Q9NQZ6 224 aa16.54■□□□□ 0.24
CLN3-207ENST00000395653 PRKDCP78527 4128 aaKnown RBP16.54■□□□□ 0.24
CLN3-207ENST00000395653 WI2-2373I1.2A0A1W2PRP0 233 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 OR2T8A6NH00 312 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 K7EIL1 84 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 NXPH3O95157 252 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 CSN3P07498 182 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 Q56UQ5 140 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 MZT2BQ6NZ67 158 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 UBAC2Q8NBM4 344 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 COQ8AQ8NI60 647 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 MRAPQ8TCY5 172 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 HIPK2Q9H2X6 1198 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 ZNF256Q9Y2P7 627 aaPredicted RBP16.53■□□□□ 0.24
CLN3-207ENST00000395653 A8MWP6 167 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 HOXB5P09067 269 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 MFAP4P55083 255 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 SLC24A4Q8NFF2 622 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 NUDT15Q9NV35 164 aa16.53■□□□□ 0.24
CLN3-207ENST00000395653 FAM240BA0A1B0GVZ2 78 aa16.52■□□□□ 0.23
CLN3-207ENST00000395653 C2orf83Q53S99 150 aa16.52■□□□□ 0.23
CLN3-207ENST00000395653 GGNBP1Q5YKI7 109 aa16.52■□□□□ 0.23
CLN3-207ENST00000395653 DTD1Q8TEA8 209 aa16.52■□□□□ 0.23
CLN3-207ENST00000395653 ZNF436Q9C0F3 470 aaPredicted RBP16.52■□□□□ 0.23
CLN3-207ENST00000395653 RBKSQ9H477 322 aa16.52■□□□□ 0.23
CLN3-207ENST00000395653 TRAV6A0A075B6T7 132 aa16.51■□□□□ 0.23
CLN3-207ENST00000395653 FAM90A26D6RGX4 464 aa16.51■□□□□ 0.23
CLN3-207ENST00000395653 ADMP35318 185 aa16.51■□□□□ 0.23
CLN3-207ENST00000395653 CHRDL1Q9BU40 450 aa16.51■□□□□ 0.23
CLN3-207ENST00000395653 ZNF320A2RRD8 509 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 C2orf70A6NJV1 201 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 CTSGP08311 255 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 SPNP16150 400 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 IFITM3Q01628 133 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 NOXA1Q86UR1 476 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 HAPLN4Q86UW8 402 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 DUSP18Q8NEJ0 188 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 MITD1Q8WV92 249 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 PRR25Q96S07 402 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 PALMDQ9NP74 551 aa16.5■□□□□ 0.23
CLN3-207ENST00000395653 NUPL2O15504 423 aaKnown RBP16.49■□□□□ 0.23
CLN3-207ENST00000395653 ADAP1O75689 374 aa16.49■□□□□ 0.23
CLN3-207ENST00000395653 IGHV3-48P01763 117 aa16.49■□□□□ 0.23
CLN3-207ENST00000395653 NPY1RP25929 384 aa16.49■□□□□ 0.23
CLN3-207ENST00000395653 OPRK1P41145 380 aa16.49■□□□□ 0.23
CLN3-207ENST00000395653 NPBWR1P48145 328 aa16.49■□□□□ 0.23
CLN3-207ENST00000395653 UNQ9165/PRO28630Q6UXU0 137 aa16.49■□□□□ 0.23
CLN3-207ENST00000395653 ADAMTSL5Q6ZMM2 481 aa16.49■□□□□ 0.23
CLN3-207ENST00000395653 RNASEH2CQ8TDP1 164 aaKnown RBP16.49■□□□□ 0.23
CLN3-207ENST00000395653 TMEM190Q8WZ59 177 aa16.49■□□□□ 0.23
CLN3-207ENST00000395653 U3KQ87 197 aa16.49■□□□□ 0.23
CLN3-207ENST00000395653 IGHV3-35A0A0C4DH35 117 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 TMEM213A2RRL7 107 aa16.48■□□□□ 0.23
CLN3-207ENST00000395653 NDUFA4O00483 81 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms