RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TLE1Q04724 770 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 VAMP3Q15836 100 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 BSXQ3C1V8 233 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 OR1P1Q8NH06 330 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 IDI2-AS1Q9NZ38 188 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 Q9UFV3 132 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 DSPP15924 2871 aaKnown RBP7.94□□□□□ -1.14
COL6A3-204ENST00000392003 GYPAP02724 150 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 ZNF134P52741 427 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 TMEM30BQ3MIR4 351 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 FKBP11Q9NYL4 201 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 PITPNC1Q9UKF7 332 aa7.94□□□□□ -1.14
COL6A3-204ENST00000392003 hADV38S2A0JD32 116 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 H7BYZ3 331 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 RELBQ01201 579 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 CT45A1Q5HYN5 189 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 CST9LP1Q5W188 147 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 WDR25Q64LD2 544 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-204ENST00000392003 CT45A3Q8NHU0 189 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 ATP6V0BQ99437 205 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 A0A1B0GUS0 222 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 HINT1P49773 126 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-204ENST00000392003 RTL8BQ17RB0 113 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 C17orf58Q2M2W7 97 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 STUMQ69YW2 141 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 ABHD12Q8N2K0 398 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 GTSF1LQ9H1H1 148 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 ATRXP46100 2492 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 SAA2-SAA4A0A096LPE2 208 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 A4D1N5 150 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 CORTO00230 105 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 SAA2P0DJI9 122 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-204ENST00000392003 RND2P52198 227 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 HSPE1P61604 102 aaKnown RBP7.93□□□□□ -1.14
COL6A3-204ENST00000392003 ZNF738Q8NE65 137 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 PARLQ9H300 379 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 DYNLRB1Q9NP97 96 aa7.93□□□□□ -1.14
COL6A3-204ENST00000392003 C11orf94C9JXX5 98 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 CGB3P0DN86 165 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 CGB7P0DN87 165 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 NPY1RP25929 384 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 PDLIM4P50479 330 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 GAFA1Q96PS6 74 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 NPVFQ9HCQ7 196 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 ELOVL5Q9NYP7 299 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 TRAV3A0A0B4J244 114 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 TRAV38-1A0A0B4J264 116 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 C15orf61A6NNL5 157 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 RRHO14718 337 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 OPRK1P41145 380 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 VDAC2P45880 294 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-204ENST00000392003 CCL8P80075 99 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 C5orf64Q2M2E5 130 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 OR4A47Q6IF82 309 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 TOMM20LQ6UXN7 152 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 ZNF788Q6ZQV5 615 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 C16orf82Q7Z2V1 217 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 FAM216BQ8N7L0 139 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 Q8NA96 180 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 NUP37Q8NFH4 326 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 OR4X1Q8NH49 305 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 PATZ1Q9HBE1 687 aaKnown RBP7.92□□□□□ -1.14
COL6A3-204ENST00000392003 PRNDQ9UKY0 176 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 PXMP4Q9Y6I8 212 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 CHD8Q9HCK8 2581 aa7.92□□□□□ -1.14
COL6A3-204ENST00000392003 ABCA4P78363 2273 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 K7ERU9 68 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 TMPRSS2O15393 492 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 Q8TCH9 128 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 GATAD1Q8WUU5 269 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 MS4A5Q9H3V2 200 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 FAM90A27PA6NNH2 459 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 PDE6DO43924 150 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 STAG3L2P0CL84 134 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 TREML4Q6UXN2 200 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 DDB2Q92466 427 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 HCFC1P51610 2035 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 RPL23P62829 140 aaKnown RBP7.91□□□□□ -1.14
COL6A3-204ENST00000392003 MIC13Q5XKP0 118 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 SSX8Q7RTT4 187 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 RAB1CQ92928 201 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 ANAPC16Q96DE5 110 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 PLEKHA3Q9HB20 300 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 FOXA2Q9Y261 457 aaPredicted RBP7.91□□□□□ -1.14
COL6A3-204ENST00000392003 OR51B2Q9Y5P1 312 aa7.91□□□□□ -1.14
COL6A3-204ENST00000392003 SPTBN1Q01082 2364 aaKnown RBP7.91□□□□□ -1.14
COL6A3-204ENST00000392003 TRBV24-1A0A075B6N3 115 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 MT-CO2P00403 227 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 APOA2P02652 100 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 AZU1P20160 251 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 GALR1P47211 349 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 PRR31Q5SQ13 230 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 DUX4L9Q6RFH8 374 aaPredicted RBP7.9□□□□□ -1.14
COL6A3-204ENST00000392003 TEPPQ6URK8 271 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 NECAP1Q8NC96 275 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 RPUSD1Q9UJJ7 312 aaKnown RBP7.9□□□□□ -1.14
COL6A3-204ENST00000392003 VENTXO95231 258 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 CXorf1O96002 111 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 DEFA4P12838 97 aa7.9□□□□□ -1.14
COL6A3-204ENST00000392003 CKS1BP61024 79 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms