RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PRSS29PA6NIE9 313 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 CELA3AP09093 270 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 SRIP30626 198 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 C9orf47Q6ZRZ4 202 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 RIMKLAQ8IXN7 391 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 SPEM1Q8N4L4 309 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 A0A1B0GV90 55 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 GAGE12BA1L429 117 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 K7ESM1 405 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 PTGESO14684 152 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 NDUFB4O95168 129 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 C1QBP02746 253 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 PPIFP30405 207 aaKnown RBP3.95□□□□□ -1.78
SCN1A-202ENST00000375405 CD300CQ08708 224 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 GAGE13Q4V321 117 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 Q6ZNB5 142 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 MMD2Q8IY49 270 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 TEX45Q8NA69 505 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 ITLN1Q8WWA0 313 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 IGHV4-61A0A0C4DH41 118 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 TMEM178BH3BS89 294 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 PMVKQ15126 192 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF474Q6S9Z5 364 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-202ENST00000375405 TMEM45BQ96B21 275 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 RSPO3Q9BXY4 272 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-202ENST00000375405 PRDM6Q9NQX0 595 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 HCSTQ9UBK5 93 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 WDR81Q562E7 1941 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 TCF20Q9UGU0 1960 aaKnown RBP3.95□□□□□ -1.78
SCN1A-202ENST00000375405 USF3Q68DE3 2245 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 ANGP03950 147 aaKnown RBP3.95□□□□□ -1.78
SCN1A-202ENST00000375405 APOC4P55056 127 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 HSPE1P61604 102 aaKnown RBP3.95□□□□□ -1.78
SCN1A-202ENST00000375405 PSG7Q13046 419 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 TMEM240Q5SV17 173 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 SEM1Q6ZVN7 128 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 PRIMA1Q86XR5 153 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 NEU4Q8WWR8 484 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-202ENST00000375405 SCMH1Q96GD3 660 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 ATOH8Q96SQ7 321 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 OVOL2Q9BRP0 275 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 TRGV11A0A075B6L2 103 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 ETDCA0A1B0GVM5 59 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 VCYO14598 125 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 DUSP14O95147 198 aaKnown RBP3.95□□□□□ -1.78
SCN1A-202ENST00000375405 MP68P56378 58 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF124Q15973 351 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 MIC13Q5XKP0 118 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 HTR3DQ70Z44 454 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 OR51G1Q8NGK1 321 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 LHX9Q9NQ69 397 aa3.95□□□□□ -1.78
SCN1A-202ENST00000375405 SETD1AO15047 1707 aaKnown RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TRAV23DV6A0A075B6W5 121 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TRAV40A0A0B4J280 105 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 MARCH11A6NNE9 402 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 FABP5Q01469 135 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 FBLIM1Q8WUP2 373 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 C14orf144Q96I85 54 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 KIR3DX1Q9H7L2 352 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 VSIRQ9H7M9 311 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 LINC00527Q9UJ94 153 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 PKIGQ9Y2B9 76 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 CHTOPQ9Y3Y2 248 aaKnown RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 MRPS18BQ9Y676 258 aaKnown RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 SPG11Q96JI7 2443 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TRAV1-2A0A0B4J238 106 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 CENPVL3A0A0U1RRI6 287 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TINCRA0A1B0GVN0 87 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 LINC01553A4QN01 128 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 F2Z2F3 143 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 PLPP2O43688 288 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 SNAI1O95863 264 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 UBE2D3P61077 147 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 SAXO2Q658L1 398 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 SPSB3Q6PJ21 355 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 LILRA3Q8N6C8 439 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 IGF2BP2-AS1Q96M15 143 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 PKIBQ9C010 78 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 FGF20Q9NP95 211 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 SERP1Q9Y6X1 66 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 CREBBPQ92793 2442 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF250P15622 560 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TM4SF1P30408 202 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 UBE2E1P51965 193 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 KLF16Q9BXK1 252 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 ELOVL5Q9NYP7 299 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 A0A087WUJ7 227 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TRAV14DV4A0A0A6YYC5 116 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 ETV2O00321 342 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 PFN1P07737 140 aaKnown RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 FGF9P31371 208 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 P2RY1P47900 373 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 FOXG1P55316 489 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 CMC4P56277 68 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 KLRD1Q13241 179 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 CCSMST1Q4G0I0 132 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 C11orf87Q6NUJ2 197 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 ZAR1Q86SH2 424 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 FOXJ2Q9P0K8 574 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms