RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 TNFSF10P50591 281 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 C19orf35Q6ZS72 473 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 MBD3L1Q8WWY6 194 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 RPP21Q9H633 154 aaKnown RBP5.44□□□□□ -1.54
SMC1A-202ENST00000375340 HIGD1CA8MV81 97 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 BSPH1Q075Z2 132 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 TCF24Q7RTU0 167 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 ZCCHC24Q8N2G6 241 aaKnown RBP5.44□□□□□ -1.54
SMC1A-202ENST00000375340 KIR3DL3Q8N743 410 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 TXNDC17Q9BRA2 123 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 IGHV3OR16-10A0A075B7F0 116 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 PSPNO60542 156 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 CD40P25942 277 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 ZNF726P1Q15940 193 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 PNKDQ8N490 385 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 CACNA1HO95180 2353 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 CEACAM1P13688 526 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 CKS2P33552 79 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 CEACAM3P40198 252 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 C17orf82Q86X59 251 aaPredicted RBP5.44□□□□□ -1.54
SMC1A-202ENST00000375340 OR4C13Q8NGP0 309 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 NDUFAF3Q9BU61 184 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 ZNF503-AS2A6NEH8 195 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 GZMBP10144 247 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 CCL3L1P16619 93 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 SLC25A34Q6PIV7 304 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 TREML4Q6UXN2 200 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 ARL6IP6Q8N6S5 226 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 Q9H3A6 140 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 RNF115Q9Y4L5 304 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 CD33P20138 364 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 JOSD1Q15040 202 aaPredicted RBP5.44□□□□□ -1.54
SMC1A-202ENST00000375340 FAM90A2PQ658T7 463 aa5.44□□□□□ -1.54
SMC1A-202ENST00000375340 EREGO14944 169 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 KIR2DL2P43627 348 aaPredicted RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 TMEM42Q69YG0 159 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 RPP25LQ8N5L8 163 aaKnown RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 SRSF6Q13247 344 aaKnown RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 IGHV3OR16-13A0A075B7E8 117 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 IGHV3-74A0A0B4J1X5 117 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 AHRRA9YTQ3 701 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 IFNL4K9M1U5 179 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 DUTP33316 252 aaKnown RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 C18orf15Q96N68 181 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 PCP4P48539 62 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 SRSF7Q16629 238 aaKnown RBP eCLIP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 PRR7Q8TB68 274 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 MYOZ3Q8TDC0 251 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 SEPSECSQ9HD40 501 aaKnown RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 FOXA2Q9Y261 457 aaPredicted RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 APOHP02749 345 aaPredicted RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 GFRA1P56159 465 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 LINC01560Q8TB33 94 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 KLK15Q9H2R5 256 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 GAGE10A6NGK3 116 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 TMEM70Q9BUB7 260 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 MRPS18CQ9Y3D5 142 aaKnown RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 SS18L1O75177 396 aaPredicted RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 IL4P05112 153 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 TEX38Q6PEX7 206 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 PLA2G2EQ9NZK7 142 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 IGHV3-49A0A0A0MS15 119 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 RELQ04864 619 aaPredicted RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 ZFP36L1Q07352 338 aaKnown RBP5.43□□□□□ -1.54
SMC1A-202ENST00000375340 SCGB1D4Q6XE38 83 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 FMC1Q96HJ9 113 aa5.43□□□□□ -1.54
SMC1A-202ENST00000375340 ZNF407Q9C0G0 2248 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 FAM181BA6NEQ2 426 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 ZNF207O43670 478 aaKnown RBP5.42□□□□□ -1.54
SMC1A-202ENST00000375340 RPL7P18124 248 aaKnown RBP5.42□□□□□ -1.54
SMC1A-202ENST00000375340 GCSHP23434 173 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 ZNRD1Q9P1U0 126 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 TRAV1-1A0A0B4J248 108 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 FOXI3A8MTJ6 420 aaPredicted RBP5.42□□□□□ -1.54
SMC1A-202ENST00000375340 GPX4P36969 197 aaPredicted RBP5.42□□□□□ -1.54
SMC1A-202ENST00000375340 SPANXN1Q5VSR9 72 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 ZNF664Q8N3J9 261 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 AGMATQ9BSE5 352 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 H7C2G1 150 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 CCL21O00585 134 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 IL18BPO95998 194 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 HLA-DRB1P01911 266 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 SCNM1Q9BWG6 230 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 TMEM242Q9NWH2 141 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 PPIAL4CA0A0B4J2A2 164 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 PPIAL4GP0DN37 164 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 NTF4P34130 210 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 LINC01551Q86U37 167 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 RAB1CQ92928 201 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 SLC25A33Q9BSK2 321 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 OR4A5Q8NH83 315 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 OR9G1Q8NH87 305 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 PROK2Q9HC23 129 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 ELOVL5Q9NYP7 299 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 THYN1Q9P016 225 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 LY6G6EA0A0G2JKS1 128 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 UPK2O00526 184 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 MBNL2Q5VZF2 373 aaKnown RBP5.42□□□□□ -1.54
SMC1A-202ENST00000375340 FBXL15Q9H469 300 aa5.42□□□□□ -1.54
SMC1A-202ENST00000375340 U3KQA8 63 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms