RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ZNF600Q6ZNG1 722 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 TTC9CQ8N5M4 171 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 LINC01560Q8TB33 94 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 PIMREGQ9BSJ6 248 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 MRPL20Q9BYC9 149 aaKnown RBP9.58□□□□□ -0.88
PTPRF-203ENST00000372407 RPP21Q9H633 154 aaKnown RBP9.58□□□□□ -0.88
PTPRF-203ENST00000372407 PPP1R17O96001 155 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 APOHP02749 345 aaPredicted RBP9.57□□□□□ -0.88
PTPRF-203ENST00000372407 LHX2P50458 406 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 ZNF56Q15929 161 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 ZNF324BQ6AW86 544 aaPredicted RBP9.57□□□□□ -0.88
PTPRF-203ENST00000372407 C18orf15Q96N68 181 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 FOXA2Q9Y261 457 aaPredicted RBP9.57□□□□□ -0.88
PTPRF-203ENST00000372407 TP53BP1Q12888 1972 aaPredicted RBP9.57□□□□□ -0.88
PTPRF-203ENST00000372407 UBE2L6O14933 153 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 TMEM160Q9NX00 188 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 VWA8A3KMH1 1905 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 HEATR1Q9H583 2144 aaKnown RBP9.57□□□□□ -0.88
PTPRF-203ENST00000372407 PATJQ8NI35 1801 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 IGKV1D-8A0A087WSZ0 117 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 A0A1B0GW15 77 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 C17orf100A8MU93 164 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 CELA3BP08861 270 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 COX6B1P14854 86 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 MST1P26927 711 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 PDLIM4P50479 330 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 NEUROG1Q92886 237 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 FBXL7Q9UJT9 491 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 USF3Q68DE3 2245 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 UPK2O00526 184 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 NAPSAO96009 420 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 TRGV3P03979 118 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 LHFPL1Q86WI0 220 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 TMEM170AQ8WVE7 144 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 COPS9Q8WXC6 57 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 WDR83OSQ9Y284 106 aa9.57□□□□□ -0.88
PTPRF-203ENST00000372407 DOCK4Q8N1I0 1966 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 CUL9Q8IWT3 2517 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 SRSF3P84103 164 aaKnown RBP9.56□□□□□ -0.88
PTPRF-203ENST00000372407 FAM19A2Q8N3H0 131 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 IGHV3-49A0A0A0MS15 119 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 IZUMO1RA6ND01 250 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 C1QTNF9BB2RNN3 333 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 M0R381 172 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 SMIM13P0DJ93 91 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 FMC1Q96HJ9 113 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 A0A1W2PRE2 83 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 HIGD1CA8MV81 97 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 CD55P08174 381 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 ZNF497Q6ZNH5 498 aa9.56□□□□□ -0.88
PTPRF-203ENST00000372407 A0A0A6YYD4 124 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 SERF1AO75920 110 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 C1QTNF9P0C862 333 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 SAA1P0DJI8 122 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-203ENST00000372407 TMEM170BQ5T4T1 132 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 ORMDL3Q8N138 153 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 C9orf106Q8NAJ2 232 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 MBD3L1Q8WWY6 194 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 MOB4Q9Y3A3 225 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 S4R3C0 116 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 LINC00587B1AMM8 73 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 CEACAM4O75871 244 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 IGKV1D-33P01593 117 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 IGKV1-33P01594 117 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 PCP4P48539 62 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 MORN2Q502X0 79 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 MEIG1Q5JSS6 88 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 NRN1Q9NPD7 142 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 C15orf61A6NNL5 157 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 C9orf172C9J069 976 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 CCL3L1P16619 93 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 CRYGSP22914 178 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 RTN4RL2Q86UN3 420 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 NDUFAF3Q9BU61 184 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 OSTCQ9NRP0 149 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 FER1L5A0AVI2 2057 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST1H2BKO60814 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST1H2BJP06899 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 SCGB1A1P11684 91 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 CD59P13987 128 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST1H2BOP23527 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST1H2BBP33778 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST1H2BDP58876 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST1H2BCP62807 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 BSPH1Q075Z2 132 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST2H2BEQ16778 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-203ENST00000372407 NEU4Q8WWR8 484 aaPredicted RBP9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST1H2BHQ93079 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST1H2BNQ99877 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 HIST1H2BMQ99879 126 aa9.55□□□□□ -0.88
PTPRF-203ENST00000372407 CHD5Q8TDI0 1954 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 GREB1Q4ZG55 1949 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 IGKV1-12A0A0C4DH73 117 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 A0A0G2JLM5 398 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 C9JCJ5 164 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 IGKV1D-12P01611 117 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 FAM57AQ8TBR7 257 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 Q9H3A6 140 aa9.54□□□□□ -0.88
PTPRF-203ENST00000372407 SAA2-SAA4A0A096LPE2 208 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms