RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 PATE1Q8WXA2 126 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 ULBP3Q9BZM4 244 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 PLEKHJ1Q9NW61 149 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 PFDN6O15212 129 aa-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 BLVRAP53004 296 aa-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 BATFQ16520 125 aa-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 SPANXN5Q5MJ07 72 aa-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 MCFD2Q8NI22 146 aa-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 WDR61Q9GZS3 305 aaKnown RBP-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 CHMP4BQ9H444 224 aaKnown RBP-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 IMP3Q9NV31 184 aaKnown RBP-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 CITO14578 2027 aa-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 ECM29Q5VYK3 1845 aa-0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 TNCP24821 2201 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HEATR1Q9H583 2144 aaKnown RBP-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 SCN10AQ9Y5Y9 1956 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 GOLGA8KD6RF30 607 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 OCMP0CE72 109 aaPredicted RBP-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 MIFP14174 115 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HIST1H2BOP23527 126 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HIST1H2BBP33778 126 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HIST1H2BDP58876 126 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HIST1H2BCP62807 126 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HIST2H2BEQ16778 126 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 KHDC3LQ587J8 217 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HIST2H2BFQ5QNW6 126 aaPredicted RBP-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 IQCF2Q8IXL9 164 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 OR5A1Q8NGJ0 315 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HIST1H2BHQ93079 126 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 OPTNQ96CV9 577 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HIST1H2BNQ99877 126 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 HIST1H2BMQ99879 126 aa-0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 SYNE1Q8NF91 8797 aaKnown RBP-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 DSTQ03001 7570 aaKnown RBP-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 SSNA1O43805 119 aa-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 UBL3O95164 117 aa-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 MGST1P10620 155 aaKnown RBP-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 MARCKSL1P49006 195 aa-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 RHOGP84095 191 aa-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 DPPA3Q6W0C5 159 aa-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 SFT2D1Q8WV19 159 aa-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 DNAJC9Q8WXX5 260 aa-0.03□□□□□ -2.41
RNU4-28P-201ENST00000364739 RIC1Q4ADV7 1423 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 CCDC160A6NGH7 325 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 GOLGA6L19H0YKK7 550 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 LYZL6O75951 148 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 DNAL4O96015 105 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 IFITM2Q01629 132 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 MLLT11Q13015 90 aaPredicted RBP-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 CIRBPQ14011 172 aaKnown RBP-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 SPANXN3Q5MJ09 141 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 TEX261Q6UWH6 196 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 Q6ZS49 121 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 LCA10Q71F78 164 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 IMP4Q96G21 291 aaKnown RBP-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 TAS2R4Q9NYW5 299 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 U3KQ87 197 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 KCPQ6ZWJ8 1503 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 DCCP43146 1447 aa-0.04□□□□□ -2.42
RNU4-28P-201ENST00000364739 MTUS2Q5JR59 1369 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 HECW1Q76N89 1606 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 TRAV3A0A0B4J244 114 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 CALUO43852 315 aaPredicted RBP-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 COX5BP10606 129 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 SKP1P63208 163 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 RHEBQ15382 184 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 MPV17LQ2QL34 196 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 DEFB113Q30KQ7 82 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 SOSTDC1Q6X4U4 206 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 MIR17HGQ75NE6 70 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 OR51D1Q8NGF3 324 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 TERB2Q8NHR7 220 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 RASL12Q9NYN1 266 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 C3orf18Q9UK00 162 aa-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 CHD3Q12873 2000 aaKnown RBP-0.05□□□□□ -2.42
RNU4-28P-201ENST00000364739 KIAA1549Q9HCM3 1950 aa-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 PLXND1Q9Y4D7 1925 aa-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 RPS12P25398 132 aaKnown RBP-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 CASQ1P31415 396 aa-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 NAA20P61599 178 aa-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 C1orf137Q5JT78 98 aa-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 LPCAT4Q643R3 524 aa-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 RPL22L1Q6P5R6 122 aaKnown RBP-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 MRPL30Q8TCC3 161 aaKnown RBP-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 CMTM5Q96DZ9 223 aa-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 NIT2Q9NQR4 276 aa-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 CMTM6Q9NX76 183 aa-0.06□□□□□ -2.42
RNU4-28P-201ENST00000364739 TAF1LQ8IZX4 1826 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 MUC12Q9UKN1 5478 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 TRAV12-1A0A0B4J245 112 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 A0A0D9SG52 128 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 PQLC2LA1A4F0 135 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 ZNF736B4DX44 427 aaPredicted RBP-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 KCNK1O00180 336 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 CXCR6O00574 342 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 SULT1B1O43704 296 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 CLVS2Q5SYC1 327 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 OR51I1Q9H343 314 aa-0.07□□□□□ -2.42
RNU4-28P-201ENST00000364739 ASH1LQ9NR48 2969 aaKnown RBP-0.08□□□□□ -2.42
RNU4-28P-201ENST00000364739 TCL1BO95988 128 aa-0.08□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms