RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 C18orf12Q96KH6 178 aa15.39■□□□□ 0.05
SHANK1-202ENST00000359082 RBBP6Q7Z6E9 1792 aaKnown RBP15.39■□□□□ 0.05
SHANK1-202ENST00000359082 A0A1B0GW15 77 aa15.39■□□□□ 0.05
SHANK1-202ENST00000359082 SHISA3A0PJX4 238 aa15.39■□□□□ 0.05
SHANK1-202ENST00000359082 ZNF525Q8N782 197 aa15.39■□□□□ 0.05
SHANK1-202ENST00000359082 PPIFP30405 207 aaKnown RBP15.38■□□□□ 0.05
SHANK1-202ENST00000359082 LAIR2Q6ISS4 152 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 C1orf162Q8NEQ5 155 aaPredicted RBP15.38■□□□□ 0.05
SHANK1-202ENST00000359082 MBD3L1Q8WWY6 194 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 ZNF257Q9Y2Q1 563 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 TRAV21A0A0B4J279 112 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 WNK3Q9BYP7 1800 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 TRAV8-2A0A0B4J237 113 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 TGFBR3LH3BV60 316 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 IFI27P40305 119 aaPredicted RBP15.38■□□□□ 0.05
SHANK1-202ENST00000359082 LHX2P50458 406 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 C3orf36Q3SXR2 165 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 IGHV3-64A0A075B6Q5 118 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 C17orf100A8MU93 164 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 H3BUT2 72 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 JMJD8Q96S16 334 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 CSRP2Q16527 193 aa15.38■□□□□ 0.05
SHANK1-202ENST00000359082 TRAV2A0A0B4J234 112 aa15.37■□□□□ 0.05
SHANK1-202ENST00000359082 UCP1P25874 307 aa15.37■□□□□ 0.05
SHANK1-202ENST00000359082 ZXDCQ2QGD7 858 aaPredicted RBP15.37■□□□□ 0.05
SHANK1-202ENST00000359082 GP6Q9HCN6 339 aa15.37■□□□□ 0.05
SHANK1-202ENST00000359082 COL11A1P12107 1806 aaPredicted RBP15.37■□□□□ 0.05
SHANK1-202ENST00000359082 RAMP3O60896 148 aa15.37■□□□□ 0.05
SHANK1-202ENST00000359082 DERL1Q9BUN8 251 aa15.37■□□□□ 0.05
SHANK1-202ENST00000359082 UPK2O00526 184 aa15.37■□□□□ 0.05
SHANK1-202ENST00000359082 Q6AWC8 147 aa15.37■□□□□ 0.05
SHANK1-202ENST00000359082 UMODP07911 640 aa15.37■□□□□ 0.05
SHANK1-202ENST00000359082 C11orf44Q8N8P7 122 aa15.37■□□□□ 0.05
SHANK1-202ENST00000359082 FNDC4Q9H6D8 234 aaPredicted RBP15.37■□□□□ 0.05
SHANK1-202ENST00000359082 NXT2Q9NPJ8 142 aaKnown RBP15.37■□□□□ 0.05
SHANK1-202ENST00000359082 CRPP02741 224 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 PHLDA1Q8WV24 401 aaPredicted RBP15.36■□□□□ 0.05
SHANK1-202ENST00000359082 TRAV14DV4A0A0A6YYC5 116 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 TRGV4A0A0C4DH28 118 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 A8MXK9 166 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 SERF1AO75920 110 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 KNL1Q8NG31 2342 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 PYYP10082 97 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 ZNF415Q09FC8 603 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 TCRBV4S1A1TA0A5B7 111 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 LYNX1G3V0Z9 82 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 LYNX1P0DP58 116 aa15.36■□□□□ 0.05
SHANK1-202ENST00000359082 RPL23P62829 140 aaKnown RBP15.36■□□□□ 0.05
SHANK1-202ENST00000359082 COL4A1P02462 1669 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 CD55P08174 381 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 FAM89BQ8N5H3 189 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 COQ2Q96H96 371 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 CHTOPQ9Y3Y2 248 aaKnown RBP15.35■□□□□ 0.05
SHANK1-202ENST00000359082 FABP5P3A8MUU1 101 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 CD28P10747 220 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 CACNG8Q8WXS5 425 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 VKORC1Q9BQB6 163 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 LINC00587B1AMM8 73 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 NRXN2Q9P2S2 1712 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 PRR32B1ATL7 298 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 VGLL1Q99990 258 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 ZNF688P0C7X2 276 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 C1QTNF9P0C862 333 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 SRSF1Q07955 248 aaKnown RBP eCLIP15.35■□□□□ 0.05
SHANK1-202ENST00000359082 FAM90A1Q86YD7 464 aa15.35■□□□□ 0.05
SHANK1-202ENST00000359082 NHP2Q9NX24 153 aaKnown RBP15.34■□□□□ 0.05
SHANK1-202ENST00000359082 CLDN16Q9Y5I7 305 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 OTOFQ9HC10 1997 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 SCN8AQ9UQD0 1980 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 KIR3DL3Q8N743 410 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 C15orf61A6NNL5 157 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 Q5PR19 223 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 SAMD13Q5VXD3 122 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 ZCCHC24Q8N2G6 241 aaKnown RBP15.34■□□□□ 0.05
SHANK1-202ENST00000359082 MYOD1P15172 320 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 NPC2P61916 151 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 NRN1Q9NPD7 142 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 SLC25A15Q9Y619 301 aa15.34■□□□□ 0.05
SHANK1-202ENST00000359082 TBX6O95947 436 aaPredicted RBP15.33■□□□□ 0.05
SHANK1-202ENST00000359082 CD33P20138 364 aa15.33■□□□□ 0.05
SHANK1-202ENST00000359082 ZNF585BQ52M93 769 aa15.33■□□□□ 0.05
SHANK1-202ENST00000359082 RNF125Q96EQ8 232 aa15.33■□□□□ 0.05
SHANK1-202ENST00000359082 PRSS22Q9GZN4 317 aa15.33■□□□□ 0.05
SHANK1-202ENST00000359082 A0A0U1RRA0 63 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 RHOGP84095 191 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 LYZL4Q96KX0 146 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 ASCL2Q99929 193 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 DEPPQ9NTK1 212 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 IGKV1D-13A0A0B4J2D9 117 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 IGKV1-13P0DP09 117 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 RNF182Q8N6D2 247 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 F5P12259 2224 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 A0A087WWC5 75 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 SRSF3P84103 164 aaKnown RBP15.33■□□□□ 0.04
SHANK1-202ENST00000359082 TRAV9-1A0A075B6T8 112 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 EPDR1Q9UM22 224 aa15.33■□□□□ 0.04
SHANK1-202ENST00000359082 MORN2Q502X0 79 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 GTSCR1Q86UQ5 136 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 SLC50A1Q9BRV3 221 aa15.32■□□□□ 0.04
SHANK1-202ENST00000359082 OR2K2Q8NGT1 345 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms