RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 DKK1O94907 266 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 CDC42EP3Q9UKI2 254 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 G3V318 75 aa6.09□□□□□ -1.44
VPS13A-202ENST00000357409 TBX6O95947 436 aaPredicted RBP6.09□□□□□ -1.44
VPS13A-202ENST00000357409 CTAG1AP78358 180 aa6.09□□□□□ -1.44
VPS13A-202ENST00000357409 FER1L6-AS1Q8NA97 138 aa6.09□□□□□ -1.44
VPS13A-202ENST00000357409 WBP1Q96G27 269 aa6.09□□□□□ -1.44
VPS13A-202ENST00000357409 KBTBD11-OT1A0A1B0GTJ5 212 aa6.09□□□□□ -1.44
VPS13A-202ENST00000357409 WFDC11Q8NEX6 87 aa6.09□□□□□ -1.44
VPS13A-202ENST00000357409 TMEM222Q9H0R3 208 aa6.09□□□□□ -1.44
VPS13A-202ENST00000357409 ZNF708P17019 499 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 RNF182Q8N6D2 247 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 E7EQL1 145 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 SAPCD1Q5SSQ6 148 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 FNDC4Q9H6D8 234 aaPredicted RBP6.08□□□□□ -1.44
VPS13A-202ENST00000357409 MSRB2Q9Y3D2 182 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 TTC32Q5I0X7 151 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 TMEM183AQ8IXX5 376 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 Q96M66 194 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 NRXN3Q9Y4C0 1643 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 LTBP4Q8N2S1 1624 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE12BA1L429 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE7O76087 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE12FP0CL80 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE12GP0CL81 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE12IP0CL82 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 FAM120AOSQ5T036 256 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 CST9LQ9H4G1 147 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 VIRMAQ69YN4 1812 aaKnown RBP6.08□□□□□ -1.44
VPS13A-202ENST00000357409 IGKV1D-8A0A087WSZ0 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 NXPH4O95158 308 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 TSPOP30536 169 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 SRSF3P84103 164 aaKnown RBP6.08□□□□□ -1.44
VPS13A-202ENST00000357409 SPINK13Q1W4C9 94 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 DEFB136Q30KP8 78 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 C10orf128Q5T292 105 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 C10orf35Q96D05 121 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 SHANK3Q9BYB0 1731 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 DEFB4AO15263 64 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 NBR2O15453 112 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 TRAV8-1A0A0A6YYK1 113 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 M0R143 59 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 PSPNO60542 156 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 CTHRC1Q96CG8 243 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 TRBV5-3A0A0A0MS03 114 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE12JA6NER3 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 J3QKU1 62 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 NAT1P18440 290 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE1Q13065 139 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE4Q13068 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE5Q13069 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 CR1LQ2VPA4 569 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 GAGE13Q4V321 117 aa6.08□□□□□ -1.44
VPS13A-202ENST00000357409 C1QTNF5Q9BXJ0 243 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 RGPD1P0DJD0 1748 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 A6NNC1 897 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 ZNF146Q15072 292 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 VCX2Q9H322 139 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 HOXA3O43365 443 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-202ENST00000357409 IGHV4-4A0A075B6R2 117 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 PFN2P35080 140 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 PTPRZ1P23471 2315 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-202ENST00000357409 A0A1B0GUL6 1792 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 KDM3BQ7LBC6 1761 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 A0A0G2JLM5 398 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 HIST1H4AP62805 103 aaKnown RBP6.07□□□□□ -1.44
VPS13A-202ENST00000357409 ZNF660Q6AZW8 331 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-202ENST00000357409 POC1AQ8NBT0 407 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 FABP2P12104 132 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 SIGLEC9Q9Y336 463 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 PNRC1Q12796 327 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-202ENST00000357409 CBY1Q9Y3M2 126 aa6.07□□□□□ -1.44
VPS13A-202ENST00000357409 BCL2P10415 239 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 ADMP35318 185 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 C2orf88Q9BSF0 95 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 CD28P10747 220 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 SAA4P35542 130 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 CDX1P47902 265 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-202ENST00000357409 UCP3P55916 312 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 S100A7L2Q5SY68 101 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 C1orf159Q96HA4 380 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 LINC00479Q96M42 142 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 TMEM133Q9H2Q1 129 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 KIAA0100Q14667 2235 aaKnown RBP6.06□□□□□ -1.44
VPS13A-202ENST00000357409 IGHV2-26A0A0B4J1V2 119 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 HS3ST6Q96QI5 342 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 PKIBQ9C010 78 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 CROCCQ5TZA2 2017 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 A0A0A6YYD4 124 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 DIAPH2-AS1Q14236 149 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 DPRXA6NFQ7 191 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 RS1O15537 224 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 ZFP36P26651 326 aaKnown RBP6.06□□□□□ -1.44
VPS13A-202ENST00000357409 SIGLEC15Q6ZMC9 328 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 DNAJC13O75165 2243 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 TRAV41A0A0B4J266 112 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 HIGD1CA8MV81 97 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 E9PLN8 166 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 CKS1BP61024 79 aa6.06□□□□□ -1.44
VPS13A-202ENST00000357409 C15orf32Q32M92 178 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms