RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SRSF4Q08170 494 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 EFNB3Q15768 340 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 C19orf54Q5BKX5 351 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 C1orf185Q5T7R7 199 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 TEX45Q8NA69 505 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 NUDT11Q96G61 164 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 DOCK10Q96BY6 2186 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 A0A1W2PS18 150 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 Q6AWC8 147 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 EBLN2Q6P2I7 272 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 SFTA2Q6UW10 78 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 TGFAP01135 160 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 FAM106CPP0CH98 169 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 CTSSP25774 331 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 ORAOV1Q8WV07 137 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 IGKV1-12A0A0C4DH73 117 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 A0A1W2PRE2 83 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 IGKV1D-12P01611 117 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 KLRB1Q12918 225 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 PSG7Q13046 419 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 CIRBPQ14011 172 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 CIARTQ8N365 385 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 SELENOKQ9Y6D0 94 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 GREB1Q4ZG55 1949 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 A0A1B0GW15 77 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 A0A1W2PR77 199 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 HGFACQ04756 655 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 Q9H3A6 140 aa16.36■□□□□ 0.21
CCDC88B-202ENST00000356786 PF4V1P10720 104 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 FAM201AQ5SY85 155 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 TMEM171Q8WVE6 324 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 TIMP4Q99727 224 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 ST20Q9HBF5 79 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 M0R381 172 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 TSPAN13O95857 204 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 SCGB3A1Q96QR1 104 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 UBTD1Q9HAC8 227 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 CELA3AP09093 270 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 PNKDQ8N490 385 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 OR4X2Q8NGF9 303 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 SAP25Q8TEE9 199 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 PPIAL4CA0A0B4J2A2 164 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 PPIAL4GP0DN37 164 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 TSPOP30536 169 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 NRN1LQ496H8 165 aa16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-202ENST00000356786 NOTCH3Q9UM47 2321 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 NPIPB11E5RHQ5 1161 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 S4R3C0 116 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 LINC00271P0C7V0 271 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 PYYP10082 97 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 RAB9AP51151 201 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 SMAGPQ0VAQ4 97 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 SIGMAR1Q99720 223 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 EREGO14944 169 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 Q6ZT83 130 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 SEMA5BQ9P283 1151 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 CADP27708 2225 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 SFTPCP11686 197 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 SLX1AQ9BQ83 275 aa16.34■□□□□ 0.21
CCDC88B-202ENST00000356786 NKX2-8O15522 239 aa16.33■□□□□ 0.21
CCDC88B-202ENST00000356786 TMEM50AO95807 157 aa16.33■□□□□ 0.21
CCDC88B-202ENST00000356786 MST1LQ2TV78 715 aa16.33■□□□□ 0.21
CCDC88B-202ENST00000356786 LCN12Q6JVE5 192 aa16.33■□□□□ 0.21
CCDC88B-202ENST00000356786 OR5A1Q8NGJ0 315 aa16.33■□□□□ 0.21
CCDC88B-202ENST00000356786 VWCEQ96DN2 955 aa16.33■□□□□ 0.21
CCDC88B-202ENST00000356786 CLEC7AQ9BXN2 247 aa16.33■□□□□ 0.21
CCDC88B-202ENST00000356786 DOCK4Q8N1I0 1966 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 C10orf126Q8N4M7 172 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 CACNG7P62955 275 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 PPP1R32Q7Z5V6 425 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 RTN4RL2Q86UN3 420 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 FADS6Q8N9I5 356 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 FER1L6-AS1Q8NA97 138 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 ABCA7Q8IZY2 2146 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 KBTBD11-OT1A0A1B0GTJ5 212 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 SPAARA0A1B0GVQ0 90 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 NPPCP23582 126 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 SEC11AP67812 179 aa16.33■□□□□ 0.2
CCDC88B-202ENST00000356786 PAPPA-AS1Q5QFB9 102 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 FAM216BQ8N7L0 139 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 NAA38Q9BRA0 125 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 FBXL15Q9H469 300 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 GEMIN7Q9H840 131 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 KIAA2026Q5HYC2 2103 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 CACNA1HO95180 2353 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 LTBRP36941 435 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 NMSQ5H8A3 153 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 RNASEH2CQ8TDP1 164 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 EPDR1Q9UM22 224 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 NDUFA3O95167 84 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 MEIG1Q5JSS6 88 aa16.32■□□□□ 0.2
CCDC88B-202ENST00000356786 CECR9P0C854 216 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 ZNF56Q15929 161 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 ACTL10Q5JWF8 245 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 FLVCR1-AS1Q8TAF5 88 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 CRIM1Q9NZV1 1036 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 FOXA2Q9Y261 457 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 STAG3L3P0CL85 134 aa16.31■□□□□ 0.2
CCDC88B-202ENST00000356786 WDR81Q562E7 1941 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms