RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 F2RL2O00254 374 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 NBEAP1P0C6P0 100 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 MUC21Q5SSG8 566 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 COX14Q96I36 57 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 IGFBP3P17936 291 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-203ENST00000353578 AZU1P20160 251 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 RNF126Q9BV68 326 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 EDIL3O43854 480 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 GNB2P62879 340 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 A0A1W2PR80 420 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 HCFC1R1Q9NWW0 138 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 C1QTNF4Q9BXJ3 329 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 TMSB15BA0A087X1C1 80 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 TMEM155Q4W5P6 130 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 ZNF818PQ6ZRF7 136 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 ZNF385AQ96PM9 386 aaKnown RBP10.73□□□□□ -0.69
COL6A3-203ENST00000353578 FOXA3P55318 350 aaPredicted RBP10.73□□□□□ -0.69
COL6A3-203ENST00000353578 RTP5Q14D33 572 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 UNQ5815/PRO19632Q6UWF5 114 aa10.73□□□□□ -0.69
COL6A3-203ENST00000353578 SMAD7O15105 426 aaKnown RBP10.72□□□□□ -0.69
COL6A3-203ENST00000353578 RNASE1P07998 156 aaKnown RBP10.72□□□□□ -0.69
COL6A3-203ENST00000353578 RRN3P1Q2M238 152 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 KHDC1LQ5JSQ8 128 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 ZNF525Q8N782 197 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 ST6GALNAC3Q8NDV1 305 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 LHX9Q9NQ69 397 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 KIAA1549Q9HCM3 1950 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 IGHV4-39P01824 125 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 SELLP14151 372 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 PSG6Q00889 435 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 ST6GALNAC6Q969X2 333 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 VWA8A3KMH1 1905 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 TBX6O95947 436 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-203ENST00000353578 FAM57AQ8TBR7 257 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 A0A0G2JK05 382 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 PRRT4C9JH25 899 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 NPIPB11E5RHQ5 1161 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 LINC00305Q7Z4B0 112 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 IGHV2-70DA0A0C4DH43 119 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 GFI1BQ5VTD9 330 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 IL6RP08887 468 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-203ENST00000353578 UNC119Q13432 240 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 RTBDNQ9BSG5 229 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-203ENST00000353578 TRAV17A0A0B4J275 112 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 TM4SF5O14894 197 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 DTX1Q86Y01 620 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 SCO2A0A1W2PP80 73 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 NPFFO15130 113 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 LAIR2Q6ISS4 152 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 SMIM20Q8N5G0 67 aa10.72□□□□□ -0.69
COL6A3-203ENST00000353578 ZNF56Q15929 161 aa10.71□□□□□ -0.69
COL6A3-203ENST00000353578 FAM159AQ6UWV7 190 aa10.71□□□□□ -0.69
COL6A3-203ENST00000353578 DEFB108BQ8NET1 73 aa10.71□□□□□ -0.69
COL6A3-203ENST00000353578 IGHV2OR16-5A0A0B4J2B6 119 aa10.71□□□□□ -0.7
COL6A3-203ENST00000353578 TEX43Q6ZNM6 134 aa10.71□□□□□ -0.7
COL6A3-203ENST00000353578 LINC01551Q86U37 167 aa10.71□□□□□ -0.7
COL6A3-203ENST00000353578 OR11H6Q8NGC7 330 aa10.71□□□□□ -0.7
COL6A3-203ENST00000353578 KCNK17Q96T54 332 aa10.71□□□□□ -0.7
COL6A3-203ENST00000353578 EREGO14944 169 aa10.71□□□□□ -0.7
COL6A3-203ENST00000353578 CCL26Q9Y258 94 aa10.71□□□□□ -0.7
COL6A3-203ENST00000353578 FNDC10F2Z333 226 aa10.71□□□□□ -0.7
COL6A3-203ENST00000353578 hCG_38984A0A1B0GV85 526 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 TMPRSS2O15393 492 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 VKORC1Q9BQB6 163 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 TRGV5A0A0B4J1U4 118 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 CXCL1P09341 107 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 EVI2AP22794 236 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 DUSP15Q9H1R2 295 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-203ENST00000353578 C18orf15Q96N68 181 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 ZNF688P0C7X2 276 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 MS4A4AQ96JQ5 239 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 SLC50A1Q9BRV3 221 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 NDUFA3O95167 84 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 IGHV3-43A0A0B4J1X8 118 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 IL18BPO95998 194 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 IGHV3-43DP0DP04 118 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 TNFRSF18Q9Y5U5 241 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 KIF26AQ9ULI4 1882 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-203ENST00000353578 A0A1W2PPM0 123 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 PCDH15Q96QU1 1955 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 AGRNO00468 2067 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 TRAV21A0A0B4J279 112 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 MPV17P39210 176 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 MAGEA5P43359 124 aa10.7□□□□□ -0.7
COL6A3-203ENST00000353578 SSTR5P35346 364 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 SPATA31B1PQ5VZV4 182 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 WFDC5Q8TCV5 224 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 OR2H2O95918 312 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 R4GN57 208 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 KLF4O43474 513 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 LINC00696Q6ZRV3 163 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 WFDC6Q9BQY6 131 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 KIR2DL5BA0A0G2JN68 375 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 KIR2DL5BA0A0G2JPC4 375 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 KIR2DL5AQ8N109 375 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 IGLV1-36A0A0B4J1U3 117 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 SPRY3O43610 288 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 PRKNO60260 465 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-203ENST00000353578 NAPSAO96009 420 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 PPP1R27Q86WC6 154 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms