RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TP73-AS1Q9UF72 201 aa18.3■□□□□ 0.52
TRIM28-202ENST00000341753 C20orf202A1L168 122 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 OR9G1Q8NH87 305 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 NEUROG1Q92886 237 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 TECRQ9NZ01 308 aaKnown RBP18.29■□□□□ 0.52
TRIM28-202ENST00000341753 OR51B2Q9Y5P1 312 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 RIF1Q5UIP0 2472 aaKnown RBP18.29■□□□□ 0.52
TRIM28-202ENST00000341753 CECR9P0C854 216 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 GPR6P46095 362 aaPredicted RBP18.29■□□□□ 0.52
TRIM28-202ENST00000341753 PTTG1IPP53801 180 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 RPL19P84098 196 aaKnown RBP18.29■□□□□ 0.52
TRIM28-202ENST00000341753 INO80CQ6PI98 192 aaPredicted RBP18.29■□□□□ 0.52
TRIM28-202ENST00000341753 TMEM14BQ9NUH8 114 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 ISLRO14498 428 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 HLA-DQA1P01909 254 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 TNXAQ16473 311 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 Q56UQ5 140 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 CT45A1Q5HYN5 189 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 CT45A3Q8NHU0 189 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 C18orf32Q8TCD1 76 aa18.29■□□□□ 0.52
TRIM28-202ENST00000341753 RNASE8Q8TDE3 154 aaKnown RBP18.29■□□□□ 0.52
TRIM28-202ENST00000341753 SMIM27A0A1W2PRY6 76 aa18.28■□□□□ 0.52
TRIM28-202ENST00000341753 FTH1P19P0C7X4 201 aa18.28■□□□□ 0.52
TRIM28-202ENST00000341753 HOXC12P31275 282 aa18.28■□□□□ 0.52
TRIM28-202ENST00000341753 GNG10P50151 68 aa18.28■□□□□ 0.52
TRIM28-202ENST00000341753 TRAT1Q6PIZ9 186 aa18.28■□□□□ 0.52
TRIM28-202ENST00000341753 LYG1Q8N1E2 194 aa18.28■□□□□ 0.52
TRIM28-202ENST00000341753 SSBP4Q9BWG4 385 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-202ENST00000341753 ZNF355PQ9NSJ1 428 aa18.28■□□□□ 0.52
TRIM28-202ENST00000341753 CALYQ9NYX4 217 aa18.28■□□□□ 0.52
TRIM28-202ENST00000341753 ZNRD1Q9P1U0 126 aa18.28■□□□□ 0.52
TRIM28-202ENST00000341753 SLC25A10Q9UBX3 287 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-202ENST00000341753 ZNF331Q9NQX6 463 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-202ENST00000341753 FOXA2Q9Y261 457 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-202ENST00000341753 INTS1Q8N201 2190 aaKnown RBP18.28■□□□□ 0.52
TRIM28-202ENST00000341753 HEATR1Q9H583 2144 aaKnown RBP18.27■□□□□ 0.52
TRIM28-202ENST00000341753 CADP27708 2225 aa18.27■□□□□ 0.52
TRIM28-202ENST00000341753 TSPOP30536 169 aa18.27■□□□□ 0.52
TRIM28-202ENST00000341753 STUMQ69YW2 141 aa18.27■□□□□ 0.52
TRIM28-202ENST00000341753 DUX4L9Q6RFH8 374 aaPredicted RBP18.27■□□□□ 0.52
TRIM28-202ENST00000341753 C9orf106Q8NAJ2 232 aa18.27■□□□□ 0.52
TRIM28-202ENST00000341753 IGF2BP2-AS1Q96M15 143 aa18.27■□□□□ 0.52
TRIM28-202ENST00000341753 ICE1Q9Y2F5 2266 aa18.27■□□□□ 0.52
TRIM28-202ENST00000341753 J3QR06 171 aa18.27■□□□□ 0.51
TRIM28-202ENST00000341753 GDF5OSQ5U4N7 250 aa18.27■□□□□ 0.51
TRIM28-202ENST00000341753 CLCF1Q9UBD9 225 aa18.27■□□□□ 0.51
TRIM28-202ENST00000341753 CEP250Q9BV73 2442 aa18.27■□□□□ 0.51
TRIM28-202ENST00000341753 MFAP2P55001 183 aa18.26■□□□□ 0.51
TRIM28-202ENST00000341753 PRR27Q6MZM9 219 aa18.26■□□□□ 0.51
TRIM28-202ENST00000341753 SPTBN2O15020 2390 aa18.26■□□□□ 0.51
TRIM28-202ENST00000341753 AKAP13Q12802 2813 aa18.26■□□□□ 0.51
TRIM28-202ENST00000341753 A0A1W2PN81 502 aa18.26■□□□□ 0.51
TRIM28-202ENST00000341753 PPOXP50336 477 aa18.26■□□□□ 0.51
TRIM28-202ENST00000341753 ERASQ7Z444 233 aa18.26■□□□□ 0.51
TRIM28-202ENST00000341753 IZUMO1RA6ND01 250 aa18.25■□□□□ 0.51
TRIM28-202ENST00000341753 MGST3O14880 152 aa18.25■□□□□ 0.51
TRIM28-202ENST00000341753 RPL8P62917 257 aaKnown RBP18.25■□□□□ 0.51
TRIM28-202ENST00000341753 ASCL3Q9NQ33 180 aa18.25■□□□□ 0.51
TRIM28-202ENST00000341753 DCHS1Q96JQ0 3298 aa18.25■□□□□ 0.51
TRIM28-202ENST00000341753 IGKV3-15P01624 115 aa18.25■□□□□ 0.51
TRIM28-202ENST00000341753 EBLN2Q6P2I7 272 aa18.25■□□□□ 0.51
TRIM28-202ENST00000341753 RNASEKQ6P5S7 137 aaKnown RBP18.25■□□□□ 0.51
TRIM28-202ENST00000341753 Q6ZT83 130 aa18.25■□□□□ 0.51
TRIM28-202ENST00000341753 SPACA3Q8IXA5 215 aa18.25■□□□□ 0.51
TRIM28-202ENST00000341753 KIR3DL3Q8N743 410 aa18.25■□□□□ 0.51
TRIM28-202ENST00000341753 GVINP1Q7Z2Y8 2422 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 HSBP1O75506 76 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 MSMPQ1L6U9 139 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 GCSAMQ8N6F7 178 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 OR10W1Q8NGF6 305 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 ARFGEF3Q5TH69 2177 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 IGKV1-16P04430 117 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 PYYP10082 97 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 KIR2DL2P43627 348 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-202ENST00000341753 CAMPP49913 170 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 KLHDC1Q8N7A1 406 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 ST6GALNAC6Q969X2 333 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 SGK494Q96LW2 274 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 ATMQ13315 3056 aa18.24■□□□□ 0.51
TRIM28-202ENST00000341753 ZFHX2Q9C0A1 2572 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-202ENST00000341753 M0R2Z0 102 aa18.23■□□□□ 0.51
TRIM28-202ENST00000341753 F2RL2O00254 374 aa18.23■□□□□ 0.51
TRIM28-202ENST00000341753 IGHV3-48P01763 117 aa18.23■□□□□ 0.51
TRIM28-202ENST00000341753 KIR2DS2P43631 304 aa18.23■□□□□ 0.51
TRIM28-202ENST00000341753 UBE2L3P68036 154 aaKnown RBP18.23■□□□□ 0.51
TRIM28-202ENST00000341753 DEFB109BQ30KR1 87 aa18.23■□□□□ 0.51
TRIM28-202ENST00000341753 CORO2AQ92828 525 aa18.23■□□□□ 0.51
TRIM28-202ENST00000341753 C19orf35Q6ZS72 473 aa18.23■□□□□ 0.51
TRIM28-202ENST00000341753 SPATA12Q7Z6I5 190 aa18.23■□□□□ 0.51
TRIM28-202ENST00000341753 MOGAT3Q86VF5 341 aa18.23■□□□□ 0.51
TRIM28-202ENST00000341753 SRRM4A7MD48 611 aaKnown RBP18.22■□□□□ 0.51
TRIM28-202ENST00000341753 SRRM5B3KS81 715 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 PMCHL1Q16048 86 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 C17orf58Q2M2W7 97 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 FAM181BA6NEQ2 426 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 MMP23AO75900 390 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 SSBP2P81877 361 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-202ENST00000341753 CLEC5AQ9NY25 188 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 SH2D7A6NKC9 451 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-202ENST00000341753 CORTO00230 105 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms