RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 HOXD9P28356 352 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-201ENST00000341594 SEC61GP60059 68 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TAL2Q16559 108 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 ANKRD55Q3KP44 614 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 YPEL3P61236 119 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TMEM38BQ9NVV0 291 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 POLDIP2Q9Y2S7 368 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 F2Z2F3 143 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TRGC1P0CF51 173 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 SRFP11831 508 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 BCL3P20749 454 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 ABHD17CQ6PCB6 329 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 OR2Z1Q8NG97 314 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 OR5P3Q8WZ94 311 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 SIGLEC8Q9NYZ4 499 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 C21orf140B9A014 251 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 GDF9O60383 454 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 ERVK-16P61578 105 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 GNRHR2Q96P88 292 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 PSENENQ9NZ42 101 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 RAXQ9Y2V3 346 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TRBV20-1A0A075B6N2 111 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF840PA6NDX5 716 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 P01737 135 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 CD3EP07766 207 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TIMM23BQ5SRD1 257 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 NFAM1Q8NET5 270 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-201ENST00000341594 GJC3Q8NFK1 279 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 ARPC1AQ92747 370 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 SLC25A38Q96DW6 304 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 NKX2-8O15522 239 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TOMM40O96008 361 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 APOBEC1P41238 236 aaKnown RBP3.01□□□□□ -1.93
SYNE1-201ENST00000341594 OR4C3Q8NH37 302 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TMEM222Q9H0R3 208 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TAAR2Q9P1P5 351 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 IGHV2OR16-5A0A0B4J2B6 119 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 RRHO14718 337 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TIMM8AO60220 97 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-201ENST00000341594 ZC2HC1BQ5TFG8 222 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 WDYHV1Q96HA8 205 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 GFRA4Q9GZZ7 299 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 DEC1Q9P2X7 70 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.01□□□□□ -1.93
SYNE1-201ENST00000341594 LINC01565O15544 149 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF737O75373 536 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TMEM101Q96IK0 257 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 OR2A5Q96R48 311 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TM2D1Q9BX74 207 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 SLC17A4Q9Y2C5 497 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF462Q96JM2 2506 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 WISP2O76076 250 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 FOXA2Q9Y261 457 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-201ENST00000341594 IGHV2-70DA0A0C4DH43 119 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 A0A1B0GWA3 101 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 SPTSSAQ969W0 71 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TRAV2A0A0B4J234 112 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 COQ2Q96H96 371 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 A0A1W2PQD3 144 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 LRRC3CA6NJW4 275 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 UBE2L6O14933 153 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 DRD3P35462 400 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 RNF115Q9Y4L5 304 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 MAP1AP78559 2803 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-201ENST00000341594 CTXND1A0A1B0GTU2 59 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 Q8WTZ3 238 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 TMEM59Q9BXS4 323 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 LINC00470Q9BZP3 86 aa3.01□□□□□ -1.93
SYNE1-201ENST00000341594 ZNF785A8K8V0 405 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 A8MWV9 139 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 C17orf67Q0P5P2 114 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 ATG4DQ86TL0 474 aaPredicted RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 MRPL20Q9BYC9 149 aaKnown RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 FRRS1LQ9P0K9 344 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 LYZL6O75951 148 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 CAPZBP47756 277 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 LGALS4P56470 323 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 PTH2Q96A98 100 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 MMP25Q9NPA2 562 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 SMKR1H3BMG3 65 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 A0A087X0K7 114 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 TRBV7-9A0A0J9YWB2 115 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 KIR2DS3K7RE56 304 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 CT62P0C5K7 136 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 CD22P20273 847 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 FUT3P21217 361 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 TRAV38-1A0A0B4J264 116 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 A8MWL6 223 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 OR4X1Q8NH49 305 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 RTBDNQ9BSG5 229 aaPredicted RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 F5H697 171 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 VSTM2LQ96N03 204 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 MS4A5Q9H3V2 200 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 PPIHO43447 177 aaKnown RBP3□□□□□ -1.93
SYNE1-201ENST00000341594 MFAP5Q13361 173 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 STPG4Q8N801 248 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 RNF138Q8WVD3 245 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 HS3ST3B1Q9Y662 390 aa3□□□□□ -1.93
SYNE1-201ENST00000341594 LRRC75BQ2VPJ9 315 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms