RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NPCDR1Q9BY65 106 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 SIGLEC9Q9Y336 463 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 GOLT1BQ9Y3E0 138 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 ARL14EPLP0DKL9 152 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 BTN1A1Q13410 526 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 C15orf32Q32M92 178 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 PCNX2A6NKB5 2137 aa8.29□□□□□ -1.08
USP54-201ENST00000339859 HOXA3O43365 443 aaPredicted RBP8.28□□□□□ -1.08
USP54-201ENST00000339859 ERVK11-1P61568 191 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 NHLRC2Q8NBF2 726 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 HSPB7Q9UBY9 170 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 CACNA1BQ00975 2339 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 HERPUD1Q15011 391 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 COX19Q49B96 90 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 FAM159AQ6UWV7 190 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 IGHV4-61A0A0C4DH41 118 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 ZNF833PQ6ZTB9 187 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 PCDH15Q96QU1 1955 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 IGKV1D-8A0A087WSZ0 117 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 UBE2L6O14933 153 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 PAX1P15863 534 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 TMEM144Q7Z5S9 345 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 RNF125Q96EQ8 232 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 TRAPPC1Q9Y5R8 145 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 SNURFLB1AK76 121 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 SAPCD1Q5SSQ6 148 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 ZNF383Q8NA42 475 aa8.28□□□□□ -1.08
USP54-201ENST00000339859 E9PQ18 207 aa8.27□□□□□ -1.08
USP54-201ENST00000339859 IGKV3-20P01619 116 aa8.27□□□□□ -1.08
USP54-201ENST00000339859 FCER1GP30273 86 aa8.27□□□□□ -1.08
USP54-201ENST00000339859 CCKARP32238 428 aa8.27□□□□□ -1.08
USP54-201ENST00000339859 BSXQ3C1V8 233 aa8.27□□□□□ -1.08
USP54-201ENST00000339859 C9orf62Q8N4C0 152 aa8.27□□□□□ -1.08
USP54-201ENST00000339859 GPR179Q6PRD1 2367 aa8.27□□□□□ -1.08
USP54-201ENST00000339859 LRP4O75096 1905 aa8.27□□□□□ -1.08
USP54-201ENST00000339859 LINC01619G3V211 115 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 NDUFS7O75251 213 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 BCL2P10415 239 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 DEFB121Q5J5C9 76 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 ZNF343Q6P1L6 599 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 DUX3Q96PT4 197 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 DCAF16Q9NXF7 216 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 PEF1Q9UBV8 284 aaKnown RBP8.27□□□□□ -1.09
USP54-201ENST00000339859 G0S2P27469 103 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 CFPP27918 469 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 SULT1A2P50226 295 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 LHFPL4Q7Z7J7 247 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 FBLL1A6NHQ2 334 aaKnown RBP8.27□□□□□ -1.09
USP54-201ENST00000339859 B4DEV8 164 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 VENTXO95231 258 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 C17orf58Q2M2W7 97 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 CLDN34H7C241 214 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 IGLV3-1P01715 115 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 TWIST1Q15672 202 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 AANATQ16613 207 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 C2orf83Q53S99 150 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 NRGNQ92686 78 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 NOL4LQ96MY1 436 aaPredicted RBP8.27□□□□□ -1.09
USP54-201ENST00000339859 TCEAL7Q9BRU2 100 aa8.27□□□□□ -1.09
USP54-201ENST00000339859 A0A1B0GUS0 222 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 SCGB1D1O95968 90 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 LEMD1Q68G75 181 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 SIGLEC15Q6ZMC9 328 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 RSPO3Q9BXY4 272 aaPredicted RBP8.26□□□□□ -1.09
USP54-201ENST00000339859 NAT8BQ9UHF3 227 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 VPREB3Q9UKI3 123 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 PHLDA3Q9Y5J5 127 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 ANOS1P23352 680 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 RNF212Q495C1 297 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 OR2D3Q8NGH3 330 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 FAM110DQ8TAY7 271 aaPredicted RBP8.26□□□□□ -1.09
USP54-201ENST00000339859 LINC01587Q99440 93 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 SMDT1Q9H4I9 107 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 PRDM13Q9H4Q3 707 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 TMSB15BA0A087X1C1 80 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 SEC14L6B5MCN3 397 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 GCHFRP30047 84 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 RSPO1Q2MKA7 263 aaPredicted RBP8.26□□□□□ -1.09
USP54-201ENST00000339859 FOXI3A8MTJ6 420 aaPredicted RBP8.26□□□□□ -1.09
USP54-201ENST00000339859 C19orf84I3L1E1 186 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 GUSBP1Q15486 140 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 FAM120AOSQ5T036 256 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 C8orf31Q8N9H6 132 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 FAM210BQ96KR6 192 aa8.26□□□□□ -1.09
USP54-201ENST00000339859 CNOT1A5YKK6 2376 aaKnown RBP8.26□□□□□ -1.09
USP54-201ENST00000339859 SNRNP200O75643 2136 aaKnown RBP8.25□□□□□ -1.09
USP54-201ENST00000339859 FGF16O43320 207 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 SNRPCP09234 159 aaKnown RBP8.25□□□□□ -1.09
USP54-201ENST00000339859 SMUG1Q53HV7 270 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 RNF144BQ7Z419 303 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 RAB24Q969Q5 203 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 HIST1H2BAQ96A08 127 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 TCF24Q7RTU0 167 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 BIVMQ86UB2 503 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 F11RQ9Y624 299 aaKnown RBP8.25□□□□□ -1.09
USP54-201ENST00000339859 ISLRO14498 428 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 TFF3Q07654 80 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 DUX4L9Q6RFH8 374 aaPredicted RBP8.25□□□□□ -1.09
USP54-201ENST00000339859 PRSS57Q6UWY2 283 aa8.25□□□□□ -1.09
USP54-201ENST00000339859 PRSS3P2Q8NHM4 247 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms