RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 ETV6P41212 452 aa12.14□□□□□ -0.47
HDDC2-201ENST00000318787 SURF2Q15527 256 aaPredicted RBP12.14□□□□□ -0.47
HDDC2-201ENST00000318787 TMEM268Q5VZI3 342 aa12.14□□□□□ -0.47
HDDC2-201ENST00000318787 RCHY1Q96PM5 261 aa12.14□□□□□ -0.47
HDDC2-201ENST00000318787 NEURL2Q9BR09 285 aa12.14□□□□□ -0.47
HDDC2-201ENST00000318787 CHRDL1Q9BU40 450 aa12.14□□□□□ -0.47
HDDC2-201ENST00000318787 TMEM222Q9H0R3 208 aa12.14□□□□□ -0.47
HDDC2-201ENST00000318787 PRR13Q9NZ81 148 aa12.14□□□□□ -0.47
HDDC2-201ENST00000318787 MLXQ9UH92 298 aa12.14□□□□□ -0.47
HDDC2-201ENST00000318787 GPR132Q9UNW8 380 aa12.14□□□□□ -0.47
HDDC2-201ENST00000318787 B3GALNT1O75752 331 aa12.13□□□□□ -0.47
HDDC2-201ENST00000318787 YIF1AO95070 293 aa12.13□□□□□ -0.47
HDDC2-201ENST00000318787 MT-CO2P00403 227 aa12.13□□□□□ -0.47
HDDC2-201ENST00000318787 FAUP35544 74 aaKnown RBP12.13□□□□□ -0.47
HDDC2-201ENST00000318787 SPSB3Q6PJ21 355 aa12.13□□□□□ -0.47
HDDC2-201ENST00000318787 TMEM61Q8N0U2 210 aa12.13□□□□□ -0.47
HDDC2-201ENST00000318787 TOMM5Q8N4H5 51 aa12.13□□□□□ -0.47
HDDC2-201ENST00000318787 LHFPL5Q8TAF8 219 aa12.13□□□□□ -0.47
HDDC2-201ENST00000318787 GLYATL2Q8WU03 294 aa12.13□□□□□ -0.47
HDDC2-201ENST00000318787 RBPMSQ93062 196 aaKnown RBP12.13□□□□□ -0.47
HDDC2-201ENST00000318787 WFDC10AQ9H1F0 79 aa12.13□□□□□ -0.47
HDDC2-201ENST00000318787 CRYM-AS1A6NIL9 109 aa12.12□□□□□ -0.47
HDDC2-201ENST00000318787 ZNF785A8K8V0 405 aa12.12□□□□□ -0.47
HDDC2-201ENST00000318787 NUPL2O15504 423 aaKnown RBP12.12□□□□□ -0.47
HDDC2-201ENST00000318787 GNG7O60262 68 aa12.12□□□□□ -0.47
HDDC2-201ENST00000318787 MFAP4P55083 255 aa12.12□□□□□ -0.47
HDDC2-201ENST00000318787 DHODHQ02127 395 aa12.12□□□□□ -0.47
HDDC2-201ENST00000318787 RBPMS2Q6ZRY4 209 aaKnown RBP12.12□□□□□ -0.47
HDDC2-201ENST00000318787 TMEM190Q8WZ59 177 aa12.12□□□□□ -0.47
HDDC2-201ENST00000318787 SCGB3A2Q96PL1 93 aa12.12□□□□□ -0.47
HDDC2-201ENST00000318787 ZNF436Q9C0F3 470 aaPredicted RBP12.12□□□□□ -0.47
HDDC2-201ENST00000318787 KCNIP3Q9Y2W7 256 aa12.12□□□□□ -0.47
HDDC2-201ENST00000318787 CDS2O95674 445 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 P0C879 139 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 TMED4Q7Z7H5 227 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 SELENOHQ8IZQ5 122 aaKnown RBP12.11□□□□□ -0.47
HDDC2-201ENST00000318787 DEFB125Q8N687 156 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 ZNF114Q8NC26 417 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 OR52B4Q8NGK2 314 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 SOSTQ9BQB4 213 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 RBM38Q9H0Z9 239 aaKnown RBP12.11□□□□□ -0.47
HDDC2-201ENST00000318787 C19orf73Q9NVV2 129 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 GAR1Q9NY12 217 aaKnown RBP12.11□□□□□ -0.47
HDDC2-201ENST00000318787 MRPL27Q9P0M9 148 aaKnown RBP12.11□□□□□ -0.47
HDDC2-201ENST00000318787 CACNG5Q9UF02 275 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 V9GYH0 126 aa12.11□□□□□ -0.47
HDDC2-201ENST00000318787 OR11H12B2RN74 326 aa12.1□□□□□ -0.47
HDDC2-201ENST00000318787 F8W735 103 aaPredicted RBP12.1□□□□□ -0.47
HDDC2-201ENST00000318787 I3L2K1 104 aa12.1□□□□□ -0.47
HDDC2-201ENST00000318787 NDUFA4O00483 81 aa12.1□□□□□ -0.47
HDDC2-201ENST00000318787 ADMP35318 185 aa12.1□□□□□ -0.47
HDDC2-201ENST00000318787 SUB1P53999 127 aaKnown RBP eCLIP12.1□□□□□ -0.471e-323■■■■■ 87.7
HDDC2-201ENST00000318787 AP3S2P59780 193 aa12.1□□□□□ -0.47
HDDC2-201ENST00000318787 Q6ZRM9 215 aa12.1□□□□□ -0.47
HDDC2-201ENST00000318787 SLC16A13Q7RTY0 426 aa12.1□□□□□ -0.47
HDDC2-201ENST00000318787 MARC2Q969Z3 335 aa12.1□□□□□ -0.47
HDDC2-201ENST00000318787 SRD5A3Q9H8P0 318 aa12.1□□□□□ -0.47
HDDC2-201ENST00000318787 DAZ1Q9NQZ3 744 aaKnown RBP12.1□□□□□ -0.47
HDDC2-201ENST00000318787 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.1□□□□□ -0.47
HDDC2-201ENST00000318787 KMT2CQ8NEZ4 4911 aaKnown RBP12.1□□□□□ -0.47
HDDC2-201ENST00000318787 IGHV3-49A0A0A0MS15 119 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 CEBPZOSA8MTT3 80 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 OPRK1P41145 380 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 INPP1P49441 399 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 RELQ04864 619 aaPredicted RBP12.09□□□□□ -0.47
HDDC2-201ENST00000318787 ZNF79Q15937 498 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 SPANXN2Q5MJ10 180 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 FAM219AQ8IW50 185 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 TRIM63Q969Q1 353 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 TMEM230Q96A57 120 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 GPR146Q96CH1 333 aa12.09□□□□□ -0.47
HDDC2-201ENST00000318787 HEYLQ9NQ87 328 aaPredicted RBP12.09□□□□□ -0.47
HDDC2-201ENST00000318787 CTSGP08311 255 aa12.08□□□□□ -0.48
HDDC2-201ENST00000318787 ANXA3P12429 323 aa12.08□□□□□ -0.48
HDDC2-201ENST00000318787 ELLP55199 621 aaPredicted RBP12.08□□□□□ -0.48
HDDC2-201ENST00000318787 KLF9Q13886 244 aaPredicted RBP12.08□□□□□ -0.48
HDDC2-201ENST00000318787 HAGHQ16775 308 aa12.08□□□□□ -0.48
HDDC2-201ENST00000318787 DUSP18Q8NEJ0 188 aa12.08□□□□□ -0.48
HDDC2-201ENST00000318787 TENM3Q9P273 2699 aa12.08□□□□□ -0.48
HDDC2-201ENST00000318787 HUWE1Q7Z6Z7 4374 aaKnown RBP12.08□□□□□ -0.48
HDDC2-201ENST00000318787 A8MZ25 164 aa12.07□□□□□ -0.48
HDDC2-201ENST00000318787 RNASE2P10153 161 aaKnown RBP12.07□□□□□ -0.48
HDDC2-201ENST00000318787 SPCS3P61009 180 aa12.07□□□□□ -0.48
HDDC2-201ENST00000318787 TMEM187Q14656 261 aa12.07□□□□□ -0.48
HDDC2-201ENST00000318787 CCDC190Q86UF4 302 aa12.07□□□□□ -0.48
HDDC2-201ENST00000318787 ATP6V0BQ99437 205 aa12.07□□□□□ -0.48
HDDC2-201ENST00000318787 TXN2Q99757 166 aa12.07□□□□□ -0.48
HDDC2-201ENST00000318787 NBEAL2Q6ZNJ1 2754 aa12.07□□□□□ -0.48
HDDC2-201ENST00000318787 IGKV3-7A0A075B6H7 116 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 IGHV3OR16-13A0A075B7E8 117 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 IGHV3-74A0A0B4J1X5 117 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 LINC00854A0A1B0GVQ3 168 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 ZNF701M0R085 212 aaPredicted RBP12.06□□□□□ -0.48
HDDC2-201ENST00000318787 CORTO00230 105 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 SULT1A3P0DMM9 295 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 SULT1A4P0DMN0 295 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 VAMP1P23763 118 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 NPBWR1P48145 328 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 ANKRD55Q3KP44 614 aa12.06□□□□□ -0.48
HDDC2-201ENST00000318787 SPATA25Q9BR10 227 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms