RNA–Protein interactions for RNA: ENST00000309469.8

ATG4D-201, Transcript of autophagy related 4D cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4D, Length 1,949 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-201ENST00000309469 TBX15Q96SF7 602 aa17■□□□□ 0.31
ATG4D-201ENST00000309469 LINC00869P0C866 280 aa17■□□□□ 0.31
ATG4D-201ENST00000309469 TMEM249Q2WGJ8 235 aa17■□□□□ 0.31
ATG4D-201ENST00000309469 DYNAPQ8N1N2 210 aa17■□□□□ 0.31
ATG4D-201ENST00000309469 OR2T6Q8NHC8 308 aa17■□□□□ 0.31
ATG4D-201ENST00000309469 EAF1Q96JC9 268 aaPredicted RBP17■□□□□ 0.31
ATG4D-201ENST00000309469 NBR2O15453 112 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 AREGP15514 252 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 CD24P25063 80 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 OR10J1P30954 320 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 PSMB3P49720 205 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 SSBP2P81877 361 aaPredicted RBP16.99■□□□□ 0.31
ATG4D-201ENST00000309469 PVRIGQ6DKI7 326 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 IQCF2Q8IXL9 164 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 ZNF114Q8NC26 417 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 NPBQ8NG41 125 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 C10orf105Q8TEF2 133 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 NIPSNAP3BQ9BS92 247 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 FNDC4Q9H6D8 234 aaPredicted RBP16.99■□□□□ 0.31
ATG4D-201ENST00000309469 MANBALQ9NQG1 85 aa16.99■□□□□ 0.31
ATG4D-201ENST00000309469 FLNCQ14315 2725 aa16.98■□□□□ 0.31
ATG4D-201ENST00000309469 TEX22C9J3V5 150 aa16.98■□□□□ 0.31
ATG4D-201ENST00000309469 NDUFS8O00217 210 aa16.98■□□□□ 0.31
ATG4D-201ENST00000309469 TAGLN2P37802 199 aaKnown RBP16.98■□□□□ 0.31
ATG4D-201ENST00000309469 UBE2E1P51965 193 aa16.98■□□□□ 0.31
ATG4D-201ENST00000309469 ATP5J2P56134 94 aa16.98■□□□□ 0.31
ATG4D-201ENST00000309469 SRSF1Q07955 248 aaKnown RBP eCLIP16.98■□□□□ 0.31
ATG4D-201ENST00000309469 ACY3Q96HD9 319 aa16.98■□□□□ 0.31
ATG4D-201ENST00000309469 POLR3KQ9Y2Y1 108 aaPredicted RBP16.98■□□□□ 0.31
ATG4D-201ENST00000309469 C15orf54Q8N8G6 183 aa16.98■□□□□ 0.31
ATG4D-201ENST00000309469 OR2T10Q8NGZ9 312 aa16.98■□□□□ 0.31
ATG4D-201ENST00000309469 SRSF12Q8WXF0 261 aaKnown RBP16.98■□□□□ 0.31
ATG4D-201ENST00000309469 TBL2Q9Y4P3 447 aaKnown RBP16.98■□□□□ 0.31
ATG4D-201ENST00000309469 TACC2O95359 2948 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 NDUFA3O95167 84 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 APELAP0DMC3 54 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 MEF2BQ02080 365 aaPredicted RBP16.97■□□□□ 0.31
ATG4D-201ENST00000309469 HES1Q14469 280 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 FAM90A2PQ658T7 463 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 ABHD5Q8WTS1 349 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 GATAD1Q8WUU5 269 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 TVP23CQ96ET8 276 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 TUBA4BQ9H853 241 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 LPAR2Q9HBW0 351 aa16.97■□□□□ 0.31
ATG4D-201ENST00000309469 COLCA2A8K830 154 aa16.96■□□□□ 0.31
ATG4D-201ENST00000309469 VWC2LB2RUY7 222 aa16.96■□□□□ 0.31
ATG4D-201ENST00000309469 STAG3L2P0CL84 134 aa16.96■□□□□ 0.31
ATG4D-201ENST00000309469 STAG3L3P0CL85 134 aa16.96■□□□□ 0.31
ATG4D-201ENST00000309469 MFAP2P55001 183 aa16.96■□□□□ 0.31
ATG4D-201ENST00000309469 CD81P60033 236 aa16.96■□□□□ 0.31
ATG4D-201ENST00000309469 RHOBP62745 196 aa16.96■□□□□ 0.31
ATG4D-201ENST00000309469 CLEC2AQ6UVW9 174 aa16.96■□□□□ 0.31
ATG4D-201ENST00000309469 IGHV4-61A0A0C4DH41 118 aa16.96■□□□□ 0.3
ATG4D-201ENST00000309469 FBLN7Q53RD9 439 aa16.96■□□□□ 0.3
ATG4D-201ENST00000309469 OR1P1Q8NH06 330 aa16.96■□□□□ 0.3
ATG4D-201ENST00000309469 SEPSECSQ9HD40 501 aaKnown RBP16.96■□□□□ 0.3
ATG4D-201ENST00000309469 USP9XQ93008 2570 aaPredicted RBP16.95■□□□□ 0.3
ATG4D-201ENST00000309469 TSPAN9O75954 239 aa16.95■□□□□ 0.3
ATG4D-201ENST00000309469 CNIH1O95406 144 aa16.95■□□□□ 0.3
ATG4D-201ENST00000309469 MALSU1Q96EH3 234 aa16.95■□□□□ 0.3
ATG4D-201ENST00000309469 SRSF8Q9BRL6 282 aaKnown RBP16.95■□□□□ 0.3
ATG4D-201ENST00000309469 PAGE4O60829 102 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 CXorf1O96002 111 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 GATA2P23769 480 aaPredicted RBP16.94■□□□□ 0.3
ATG4D-201ENST00000309469 EBI3Q14213 229 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 ETFRF1Q6IPR1 90 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 NPIPB3Q92617 1050 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 MISP3Q96FF7 219 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 F11RQ9Y624 299 aaKnown RBP16.94■□□□□ 0.3
ATG4D-201ENST00000309469 ZFYVE26Q68DK2 2539 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 IGHV3-48P01763 117 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 ARL14EPLP0DKL9 152 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 COX6B1P14854 86 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 SPATA31B1PQ5VZV4 182 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 C19orf35Q6ZS72 473 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 CYP2G1PQ6ZSU1 146 aa16.94■□□□□ 0.3
ATG4D-201ENST00000309469 CRYGCP07315 174 aa16.93■□□□□ 0.3
ATG4D-201ENST00000309469 C5orf64Q2M2E5 130 aa16.93■□□□□ 0.3
ATG4D-201ENST00000309469 SPNS3Q6ZMD2 512 aa16.93■□□□□ 0.3
ATG4D-201ENST00000309469 Q8N6K4 173 aa16.93■□□□□ 0.3
ATG4D-201ENST00000309469 ISOC2Q96AB3 205 aa16.93■□□□□ 0.3
ATG4D-201ENST00000309469 AJUBAQ96IF1 538 aa16.93■□□□□ 0.3
ATG4D-201ENST00000309469 MRPL36Q9P0J6 103 aaKnown RBP16.93■□□□□ 0.3
ATG4D-201ENST00000309469 MLXQ9UH92 298 aa16.93■□□□□ 0.3
ATG4D-201ENST00000309469 COL12A1Q99715 3063 aa16.93■□□□□ 0.3
ATG4D-201ENST00000309469 ZNF462Q96JM2 2506 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 CORTO00230 105 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 NDUFS6O75380 124 aaKnown RBP16.92■□□□□ 0.3
ATG4D-201ENST00000309469 FAM78BQ5VT40 261 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 THAP8Q8NA92 274 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 FLI1Q01543 452 aaPredicted RBP16.92■□□□□ 0.3
ATG4D-201ENST00000309469 PAX8Q06710 450 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 OR4F5Q8NH21 305 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 NANPQ8TBE9 248 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 PERPQ96FX8 193 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 OR4F4Q96R69 305 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 SLC25A33Q9BSK2 321 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 C19orf24Q9BVV8 132 aa16.92■□□□□ 0.3
ATG4D-201ENST00000309469 SPTAN1Q13813 2472 aaKnown RBP16.91■□□□□ 0.3
ATG4D-201ENST00000309469 IGKV1D-37A0A075B6S9 117 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms