RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 NDUFB8O95169 186 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 IFNA21P01568 189 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 TRBV12-3P01733 135 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 FGF2P09038 288 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 RNASE2P10153 161 aaKnown RBP5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 PF4V1P10720 104 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 PSMB6P28072 239 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 NKX2-1P43699 371 aaPredicted RBP5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 PROK1P58294 105 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 HSPE1P61604 102 aaKnown RBP5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 DEFB136Q30KP8 78 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 ZNF562Q6V9R5 426 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 OR2C3Q8N628 320 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 SGMS2Q8NHU3 365 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 FAM110DQ8TAY7 271 aaPredicted RBP5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 DTD1Q8TEA8 209 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 WIPF2Q8TF74 440 aaPredicted RBP5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 C2orf50Q96LR7 162 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 SPIN2AQ99865 258 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 SPIN2BQ9BPZ2 258 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 C11orf1Q9H5F2 150 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 GNB4Q9HAV0 340 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 ZC4H2Q9NQZ6 224 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 ZNF355PQ9NSJ1 428 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 MBD2Q9UBB5 411 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 HSPB7Q9UBY9 170 aa5.05□□□□□ -1.6
DEPDC4-201ENST00000299185 JMJD1CQ15652 2540 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 CLPSL1A2RUU4 121 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 FAM24AA6NFZ4 105 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 NUDT19A8MXV4 375 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 ATG12O94817 140 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 TRGV3P03979 118 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 PPIFP30405 207 aaKnown RBP5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 MAS1LP35410 378 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 CRIP2P52943 208 aaPredicted RBP5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 PAX9P55771 341 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 TPPP2P59282 170 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 SPCS3P61009 180 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 RHOGP84095 191 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 ARL16Q0P5N6 197 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 IL15RAQ13261 267 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 AARDQ4LEZ3 155 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 SLC24A4Q8NFF2 622 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 OR5AU1Q8NGC0 362 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 OR4F5Q8NH21 305 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 OR5B3Q8NH48 314 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 PPP1R1CQ8WVI7 109 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 PINX1Q96BK5 328 aaKnown RBP5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 P2RX4Q99571 388 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 CITED2Q99967 270 aaPredicted RBP5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 ZNF436Q9C0F3 470 aaPredicted RBP5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 C16orf95Q9H693 158 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 RANGRFQ9HD47 186 aaPredicted RBP5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 HEYLQ9NQ87 328 aaPredicted RBP5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 SELENOKQ9Y6D0 94 aa5.04□□□□□ -1.6
DEPDC4-201ENST00000299185 CUBNO60494 3623 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 SVEP1Q4LDE5 3571 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 IGLV11-55A0A075B6I3 123 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 FXYD6-FXYD2A0A087WZ82 144 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 TMEM89A2RUT3 159 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 K7EIM0 57 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 SYNGR2O43760 224 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 PFDN1O60925 122 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 IGF1P05019 195 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 METTL15P1P0C7V9 234 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 CTRB1P17538 263 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 NPY1RP25929 384 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 EXOSC2Q13868 293 aaKnown RBP5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 NSUN5P1Q3KNT7 163 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 SPANXN5Q5MJ07 72 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 CTRB2Q6GPI1 263 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 OR8G2PQ6IF36 304 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 SLC25A24Q6NUK1 477 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 ZNF429Q86V71 674 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 PPP1R14BQ96C90 147 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 ST6GAL2Q96JF0 529 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 CCDC140Q96MF4 163 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 NEURL2Q9BR09 285 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 SPATA25Q9BR10 227 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 SMIM3Q9BZL3 60 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 FNDC4Q9H6D8 234 aaPredicted RBP5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 ENY2Q9NPA8 101 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 PSENENQ9NZ42 101 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 ZNF257Q9Y2Q1 563 aa5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 F11RQ9Y624 299 aaKnown RBP5.03□□□□□ -1.6
DEPDC4-201ENST00000299185 IGHV3OR16-8A0A075B7F1 116 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 IGHV3-35A0A0C4DH35 117 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 TCRBV4S1A1TA0A5B7 111 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 NPIPB5A8MRT5 1133 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 PPP5D1E7EU14 171 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 BOLA2-SMG1P6H3BVE0 249 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 L7N2F9 121 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 CST7O76096 145 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 MPC2O95563 127 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 MT-CO2P00403 227 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 IFNA10P01566 189 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 GIPP09681 153 aaPredicted RBP5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 SLC25A6P12236 298 aa5.02□□□□□ -1.61
DEPDC4-201ENST00000299185 EDN2P20800 178 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 326.9 ms