RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 EDDM3AQ14507 147 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 TEPPQ6URK8 271 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 MOB1BQ7L9L4 216 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 LINC00596Q86U02 117 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 LEAP2Q969E1 77 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 CLUHP3Q96NS8 147 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 TOX4O94842 621 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 HAND1O96004 215 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 GDF1P27539 372 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 VDAC2P45880 294 aaPredicted RBP11.07□□□□□ -0.64
SKA3-201ENST00000298260 TCF24Q7RTU0 167 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 SNRNP40Q96DI7 357 aaKnown RBP11.07□□□□□ -0.64
SKA3-201ENST00000298260 COQ2Q96H96 371 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 CHODLQ9H9P2 273 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 NPVFQ9HCQ7 196 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 IGHV1-45A0A0A0MS14 117 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 C7orf71A4D174 169 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 GJE1A6NN92 205 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 ISLRO14498 428 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 KLK10O43240 276 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 AREGP15514 252 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 TMEM116Q8NCL8 245 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 C12orf49Q9H741 205 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 HILPDAQ9Y5L2 63 aa11.07□□□□□ -0.64
SKA3-201ENST00000298260 IGKV1OR2-108A0A075B7D4 117 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 SYS1-DBNDD2H3BUS1 97 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 ZNF207O43670 478 aaKnown RBP11.06□□□□□ -0.64
SKA3-201ENST00000298260 GNG7O60262 68 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 CSN3P07498 182 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 CCL7P80098 99 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 FER1L6-AS1Q8NA97 138 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 OR1N2Q8NGR9 330 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 JMJD8Q96S16 334 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 NABP2Q9BQ15 211 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 SH2D2AQ9NP31 389 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 IGHV1-24A0A0C4DH33 117 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 GAGE10A6NGK3 116 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 HIGD1CA8MV81 97 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 MPDU1O75352 247 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 APOA2P02652 100 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 COX6A1P12074 109 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 ARR3P36575 388 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 TEX45Q8NA69 505 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 IGF2BP2-AS1Q96M15 143 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 KLF13Q9Y2Y9 288 aaPredicted RBP11.06□□□□□ -0.64
SKA3-201ENST00000298260 PCNX2A6NKB5 2137 aa11.06□□□□□ -0.64
SKA3-201ENST00000298260 PTPRBP23467 1997 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 IGHV5-10-1A0A0J9YXX1 117 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 MT-CO2P00403 227 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 IGHV3-48P01763 117 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 IGLC1P0CG04 106 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 C1orf229Q6ZS94 237 aaPredicted RBP11.05□□□□□ -0.64
SKA3-201ENST00000298260 RAB37Q96AX2 223 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 TAAR6Q96RI8 345 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 TCF19Q9Y242 345 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 LY96Q9Y6Y9 160 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 CFIP05156 583 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 PYYP10082 97 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 GNG5P63218 68 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 FAM71F2Q6NXP2 309 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 MRPL14Q6P1L8 145 aaKnown RBP11.05□□□□□ -0.64
SKA3-201ENST00000298260 GVINP1Q7Z2Y8 2422 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 IMMP1LQ96LU5 166 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 SAP30LQ9HAJ7 183 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 ZNF835Q9Y2P0 537 aa11.05□□□□□ -0.64
SKA3-201ENST00000298260 TMEM30CPA0ZSE6 113 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 SS18L1O75177 396 aaPredicted RBP11.04□□□□□ -0.64
SKA3-201ENST00000298260 COMMD5Q9GZQ3 224 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 MPC1Q9Y5U8 109 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 MUC6Q6W4X9 2439 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 C21orf140B9A014 251 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 LEPROTL1O95214 131 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 NBEAP1P0C6P0 100 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 ERVK11-1P61568 191 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 SMIM12Q96EX1 92 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 TRIB1Q96RU8 372 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 TMEM140Q9NV12 185 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 TNRC6BQ9UPQ9 1833 aaKnown RBP11.04□□□□□ -0.64
SKA3-201ENST00000298260 BOD1L1Q8NFC6 3051 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 NAV3Q8IVL0 2385 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 LOC102723996A0A087X1L8 192 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 PRSS47A8MTI9 375 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 H3BUT2 72 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 CIDEAO60543 219 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 PLAUP00749 431 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 DUTP33316 252 aaKnown RBP11.04□□□□□ -0.64
SKA3-201ENST00000298260 MRPL49Q13405 166 aaKnown RBP11.04□□□□□ -0.64
SKA3-201ENST00000298260 OR9G1Q8NH87 305 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 MBD6Q96DN6 1003 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 PKIBQ9C010 78 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 SCRT2Q9NQ03 307 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 DUSP13Q9UII6 198 aa11.04□□□□□ -0.64
SKA3-201ENST00000298260 CHTOPQ9Y3Y2 248 aaKnown RBP11.04□□□□□ -0.64
SKA3-201ENST00000298260 MAP1BP46821 2468 aaKnown RBP11.03□□□□□ -0.64
SKA3-201ENST00000298260 PLXNB1O43157 2135 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 TANC2Q9HCD6 1990 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 GPR12P47775 334 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 PRR20EP86478 221 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 PRR20CP86479 221 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 PRR20DP86480 221 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms