RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 USP9XQ93008 2570 aaPredicted RBP9.26□□□□□ -0.93
CUX1-202ENST00000292538 MPDU1O75352 247 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 POU2AF1Q16633 256 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 Q8WTZ3 238 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 FAM103A1Q9BTL3 118 aaKnown RBP9.26□□□□□ -0.93
CUX1-202ENST00000292538 ZNF257Q9Y2Q1 563 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 FCN1O00602 326 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 IGLV2-23P01705 113 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 CXCL1P09341 107 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 MC5RP33032 325 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 GPR6P46095 362 aaPredicted RBP9.25□□□□□ -0.93
CUX1-202ENST00000292538 ZNF90Q03938 601 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 PSG5Q15238 335 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 MMDQ15546 238 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 SLC35E1Q96K37 410 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 UHRF2Q96PU4 802 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 GGACTQ9BVM4 153 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 GSX1Q9H4S2 264 aaPredicted RBP9.25□□□□□ -0.93
CUX1-202ENST00000292538 A0A1W2PPI3 338 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 TIMM23O14925 209 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 LY86O95711 162 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 CHRNA7P36544 502 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 HABP2Q14520 560 aaPredicted RBP9.25□□□□□ -0.93
CUX1-202ENST00000292538 LSM4Q9Y4Z0 139 aaKnown RBP9.25□□□□□ -0.93
CUX1-202ENST00000292538 POLQO75417 2590 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 OR5G3P0C626 314 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 SFTPCP11686 197 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 LDLRAD2Q5SZI1 272 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 SLC16A13Q7RTY0 426 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 P2RX4Q99571 388 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 SDF2L1Q9HCN8 221 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 MANBALQ9NQG1 85 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 S4R3C0 116 aa9.25□□□□□ -0.93
CUX1-202ENST00000292538 ZNF462Q96JM2 2506 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 TRAV5A0A0B4J249 113 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 MOSP00540 346 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 NPPCP23582 126 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 RND2P52198 227 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 RHOBP62745 196 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 TMEM167AQ8TBQ9 72 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 ITLN2Q8WWU7 325 aaPredicted RBP9.24□□□□□ -0.93
CUX1-202ENST00000292538 FNDC4Q9H6D8 234 aaPredicted RBP9.24□□□□□ -0.93
CUX1-202ENST00000292538 SCO2A0A1W2PP80 73 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 CGB1A6NKQ9 187 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 NCBP2LA6PVI3 153 aaKnown RBP9.24□□□□□ -0.93
CUX1-202ENST00000292538 CXorf1O96002 111 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 IGLV1-47P01700 117 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 PRB4P10163 310 aaPredicted RBP9.24□□□□□ -0.93
CUX1-202ENST00000292538 ORM2P19652 201 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 BSXQ3C1V8 233 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 RUSC1-AS1Q66K80 236 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 LINC00311Q8N616 119 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 LRRK2Q5S007 2527 aa9.24□□□□□ -0.93
CUX1-202ENST00000292538 A0A1W2PN81 502 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 PRB1P04280 392 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 HTR1DP28221 377 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 RPL27AP46776 148 aaKnown RBP9.23□□□□□ -0.93
CUX1-202ENST00000292538 CD69Q07108 199 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 ELOBQ15370 118 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 C2orf83Q53S99 150 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 TMEM144Q7Z5S9 345 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 ZNF596Q8TC21 504 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 CHODLQ9H9P2 273 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 MRPL36Q9P0J6 103 aaKnown RBP9.23□□□□□ -0.93
CUX1-202ENST00000292538 NAT8Q9UHE5 227 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 YTHDF2Q9Y5A9 579 aaKnown RBP9.23□□□□□ -0.93
CUX1-202ENST00000292538 LINC00869P0C866 280 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 ZFP36P26651 326 aaKnown RBP9.23□□□□□ -0.93
CUX1-202ENST00000292538 C16orf82Q7Z2V1 217 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 SLC25A33Q9BSK2 321 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 BIN3Q9NQY0 253 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 ZFHX3Q15911 3703 aa9.23□□□□□ -0.93
CUX1-202ENST00000292538 GCHFRP30047 84 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 LGALS7P47929 136 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 SUB1P53999 127 aaKnown RBP eCLIP9.22□□□□□ -0.93
CUX1-202ENST00000292538 RPL23P62829 140 aaKnown RBP9.22□□□□□ -0.93
CUX1-202ENST00000292538 PDZD11Q5EBL8 140 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 MORN5Q5VZ52 161 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 PPP1R27Q86WC6 154 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 SIGLEC9Q9Y336 463 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.22□□□□□ -0.933e-7■■■■■ 26.8
CUX1-202ENST00000292538 IGHV3OR16-10A0A075B7F0 116 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 CLDN34H7C241 214 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 STAG3L2P0CL84 134 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 STAG3L3P0CL85 134 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 CTRB1P17538 263 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 RPL29P47914 159 aaKnown RBP9.22□□□□□ -0.93
CUX1-202ENST00000292538 PRSS8Q16651 343 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 CTRB2Q6GPI1 263 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 C11orf71Q6IPW1 123 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 NEU4Q8WWR8 484 aaPredicted RBP9.22□□□□□ -0.93
CUX1-202ENST00000292538 ELOVL1Q9BW60 279 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 SLC45A2Q9UMX9 530 aa9.22□□□□□ -0.93
CUX1-202ENST00000292538 A0A087X0M5 115 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 A0A1B0GX30 115 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 SEC14L6B5MCN3 397 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 TRGC2P03986 189 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 KLF17Q5JT82 389 aaPredicted RBP9.21□□□□□ -0.93
CUX1-202ENST00000292538 OR1B1Q8NGR6 318 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 OR4X1Q8NH49 305 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms